SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32548

Length: 399 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene32548
ACAAGCATGGAAGGATCTAGGAAGGATTTGCATCCCTCTGCAGGTTCTCAAAGGCCATCTATTCGTTCAGTATGGAGAAAACCCATTTGGCAAGTACCAATTAAAGGCAGTAAAATGCCCTCGCATAAGGCTTTTGTCCTGACAAAGGAAATGGTCGAATGTCGAGCAAAAAGCAATATTATTATAGTCACATTCGGAAATTATGCATTCATGGATTTTATCCTTAATTGGGTGAAACACCTTACAGACATGGGAATTCAAAATCTTCTTGTTGGAGCAATGGATACAAAACTTGTCAATTCTTTATATTGGAAAGGCATTCCTGTTTTCGATATGGGTAGTAACATGAACACAAATGATGCTGGTTGGGGAACTCCGACATTTCATAAGATGGGACGA

Ace file of the UniGene sp_v1.1_unigene32548

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotid_trans domain containing protein	-	-	8.0e-05	19%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	68%
Blast2go	glycosyltransferase-like protein	-	-	1.4013e-45	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall pectin biosynthetic process	GO:0052325	Biological Process	1.4013e-45	78%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.4013e-45	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Reticulon	IPR003388	-	1.4013e-45	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HJ23

Fln msg: Distance to subject end: 437 aas, your sequence is shorter than subject: 133 - 661

Fln protein: TSMEGSRKDLHPSAGSQRPSIRSVWRKPIWQVPIKGSKMPSHKAFVLTKEMVECRAKSNIIIVTFGNYAFMDFILNWVKHLTDMGIQNLLVGAMDTKLVNSLYWKGIPVFDMGSNMNTNDAGWGTPTFHKMGR

Protein Length: 134

Fln nts: ACAAGCATGGAAGGATCTAGGAAGGATTTGCATCCCTCTGCAGGTTCTCAAAGGCCATCTATTCGTTCAGTATGGAGAAAACCCATTTGGCAAGTACCAATTAAAGGCAGTAAAATGCCCTCGCATAAGGCTTTTGTCCTGACAAAGGAAATGGTCGAATGTCGAGCAAAAAGCAATATTATTATAGTCACATTCGGAAATTATGCATTCATGGATTTTATCCTTAATTGGGTGAAACACCTTACAGACATGGGAATTCAAAATCTTCTTGTTGGAGCAATGGATACAAAACTTGTCAATTCTTTATATTGGAAAGGCATTCCTGTTTTCGATATGGGTAGTAACATGAACACAAATGATGCTGGTTGGGGAACTCCGACATTTCATAAGATGGGACGA

Fln Alignment:

sp_v1.1_unigene32548___PSAGSQRPSIRSVWRKPIWQVPIKGSKMPSHKAFVLTKEMVECRAKSNIIIVTFGNYAFMDFILNWVKHLTDMGIQNLLVGAMDTKLVNSLYWKGIPVFDMGSNMNTNDAGWGTPTFHKMGR
F6HJ23_______________PAPPPKSPKSQNMWTRPIWEAPPRGEKRPSLKAFQLTKTLVEQRVKDNVIIVTFGNYAFMDFILTWVKHLTDLGISNLLVGAMDTKLLEALYWRGVPVFDMGSHMSTIDVGWGTPTFHKMGR

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
14	50		50		1.0
88		25		75	0.996473
192	66	33			1.0
193			33	66	1.0
200	66	33			1.0
201	66	33			1.0
205			33	66	1.0
208	66			33	1.0
209			33	66	1.0
211		83		16	0.994512
213		33		66	1.0
214			66	33	1.0
215		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain