SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32512

Length: 542 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene32512
TAGGCATCTTGGTATTGGTTATCTACAAAGAGATGTCTTTCGTCGTAACCTTAGCAGCACTCAAGGTGTGCACACATTTGGACCAAGAATCTTGATTGATTTGATGAAGTCAGTATGCAATAGAGGGGATGATTTAAGAAATTTGGGCTTGAACTGGATAGGTTCCTGGCTTGTTGCTCTTTATGAATGTTTGAGCCACCAACCCACTGAACATGAGTCCTTTTTCCAGGTAAACTCAGAACCTGATTTCTTTAGTGATCTTGCTCAAATTCGCTTTATTCCTCTTTGTGATGGATCATATAGTTCAGTTAGAGAAGATTCTATCTGGTTACCCTGTGAAGGAACTCGTTCTGGAGTTGATGGTACATATATTTTAAAGAACTTCCCTAAGTTATATTGTGAGCTAAGAACTGTACACCCTTCTCTCCTACTCTGCCCGGCAGACGGAGATGCTGTGATCAGAGGTGATTCAGATGTGATTGTACACATGCTTCGTCGTGTTGGTGTTGGTCAGCTGTCAGCGCATGAAGTTGTGATGAAAC

Ace file of the UniGene sp_v1.1_unigene32512 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	38%
Blast2go	atp binding	-	-	1.39071e-28	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GWI8

Fln msg: Distance to subject end: 268 aas, your sequence is shorter than subject: 180 - 807

Fln protein: RHLGIGYLQRDVFRRNLSSTQGVHTFGPRILIDLMKSVCNRGDDLRNLGLNWIGSWLVALYECLSHQPTEHESFFQVNSEPDFFSDLAQIRFIPLCDGSYSSVREDSIWLPCEGTRSGVDGTYILKNFPKLYCELRTVHPSLLLCPADGDAVIRGDSDVIVHMLRRVGVGQLSAHEVVMK

Protein Length: 181

Fln nts: TAGGCATCTTGGTATTGGTTATCTACAAAGAGATGTCTTTCGTCGTAACCTTAGCAGCACTCAAGGTGTGCACACATTTGGACCAAGAATCTTGATTGATTTGATGAAGTCAGTATGCAATAGAGGGGATGATTTAAGAAATTTGGGCTTGAACTGGATAGGTTCCTGGCTTGTTGCTCTTTATGAATGTTTGAGCCACCAACCCACTGAACATGAGTCCTTTTTCCAGGTAAACTCAGAACCTGATTTCTTTAGTGATCTTGCTCAAATTCGCTTTATTCCTCTTTGTGATGGATCATATAGTTCAGTTAGAGAAGATTCTATCTGGTTACCCTGTGAAGGAACTCGTTCTGGAGTTGATGGTACATATATTTTAAAGAACTTCCCTAAGTTATATTGTGAGCTAAGAACTGTACACCCTTCTCTCCTACTCTGCCCGGCAGACGGAGATGCTGTGATCAGAGGTGATTCAGATGTGATTGTACACATGCTTCGTCGTGTTGGTGTTGGTCAGCTGTCAGCGCATGAAGTTGTGATGAAAC

Fln Alignment:

sp_v1.1_unigene32512___RHLGIGYLQRDVFRRN-LSSTQGVHTFGPRILIDLMKSVCNRGDDLRNLGLNWIGSWLVALYECLSHQPTEHESFFQVNSEPDFFSDLAQIRFIPLCDGSYSSVREDSIWLPCEGTRSGVDGTYILKNFPKLYCELRTVHPSLL-LCPADGDAVIRGDSDVIVHMLRRVGVGQLSAHEVV
F6GWI8_______________KHLGLGFLDKNIHLSDPLARALGIQEYGPKILLQIISSLCHTEDGLKSMGLAWLSSWLNALYTMPLHY--SGQSSLNSNMESDLIYDLKKIPFIPLSDGNYGSLDEGTIWLHSDSLSTELDGEHGLGAFPNLYAKLRIVNPALLSAASVDIPCMDMTLAENVTRMLLRIGVQQLSAHEIV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
297	66		33		0.997452
361		66	33		0.997452
363			33	66	0.997452
364	66			33	0.997453
365	66		33		0.997453
367		33	66		0.997452
371	66	33			0.997452
375	66		33		0.997452
377		66		33	0.997452
380		33	66		0.997452
385		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain