SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32429

Length: 574 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene32429
CGTCGTGACCTTGGCTGTCACTCATTTGCTTTGTCTCGACTCCAAAGAAGACCACTACTGTTGTTGTGGATGGGCCATCTGTCAAAAGTGTAACTACAGCCACTGAGACAATTCAACATATTCTTGACGAGGCTGTTAAAAGTCCAAATCTCCAGTATTCTCACTTCATTTCCTTGCCACTGGCTGTTCACACAGAACTTGTAGAGAAGCTCACGGACTTTCAAAACTCTGTTCTAGATTTAAGTGGTAGTGCTGGCAAAGAGGAAAGTGACTCTGACAGCGATTCAAATGCTGAATCTTCCGACGATGATTTTGAAGGTACAAAAATTGCAGTTGGCCTGAGTGTTGAAGATAATACTGAGCATGTCAAAGTAGAAATGTTGGAAATCCCTGTTAATAATGAAATCTCCAAGATTCCGGGATCAATTTCTGGAATTAAGAGTACTCATGCACATCCAGCAGATGATAATTCTAATGAAAAAGAGGCTGTTGCAGTCAATCTCAATGTAGATGGTGATAATGTTCGTGTCAAGTTAGATGTCAAGAGCATCATTCAGGATGTGAATGCAAAATC

Ace file of the UniGene sp_v1.1_unigene32429

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQI1_RICCO	-	-	7.0e-16	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	nucleic acid binding	-	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD13

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 23 aas, your sequence is shorter than subject: 190 - 292

Fln protein: S*PWLSLICFVSTPKKTTTVVVDGPSVKSVTTATETIQHILDEAVKSPNLQYSHFISLPLAVHTELVEKLTDFQNSVLDLSGSAGKEESDSDSDSNAESSDDDFEGTKIAVGLSVEDNTEHVKVEMLEIPVNNEISKIPGSISGIKSTHAHPADDNSNEKEAVAVNLNVDGDNVRVKLDVKSIIQDVNAK

Protein Length: 191

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGCTTTGTCTCGACTCCAAAGAAGACCACTACTGTTGTTGTGGATGGGCCATCTGTCAAAAGTGTAACTACAGCCACTGAGACAATTCAACATATTCTTGACGAGGCTGTTAAAAGTCCAAATCTCCAGTATTCTCACTTCATTTCCTTGCCACTGGCTGTTCACACAGAACTTGTAGAGAAGCTCACGGACTTTCAAAACTCTGTTCTAGATTTAAGTGGTAGTGCTGGCAAAGAGGAAAGTGACTCTGACAGCGATTCAAATGCTGAATCTTCCGACGATGATTTTGAAGGTACAAAAATTGCAGTTGGCCTGAGTGTTGAAGATAATACTGAGCATGTCAAAGTAGAAATGTTGGAAATCCCTGTTAATAATGAAATCTCCAAGATTCCGGGATCAATTTCTGGAATTAAGAGTACTCATGCACATCCAGCAGATGATAATTCTAATGAAAAAGAGGCTGTTGCAGTCAATCTCAATGTAGATGGTGATAATGTTCGTGTCAAGTTAGATGTCAAGAGCATCATTCAGGATGTGAATGCAAAATC

Fln Alignment:

sp_v1.1_unigene32429___DGPSVKSVTTATETIQHILDEAVKSPNLQYSHFISLPLAVHTELVEKLTDFQNSVLDLSGSAGKXXXXXXXXXXXXXXXXXFEGTKIAVGLSVEDNTEHVKVEMLEIPVNNEXXXXXXXXXXXXXTHAHPADDNSNEKEAVAVNLNVDGDNVRVKLDVKSIIQDVNAK
D5AD13_______________DGPSAKSVTTAAETIQQILEEAVKSPNLQYSHFISLPLAVHTELVEKLTDFQNSVLSLSGTAGKEESDSDSASNAESSEDDFEGKKITVDLNVEDNTEHVKVAMLEIPVNNEISKTPGSISGIENTHAHPADENSNKKEAVAVNLNVDRDNVRVKLDVKSIIQDVNAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain