SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32405

Length: 1300 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene32405

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	uncharacterized protein	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK8

Fln msg:

Fln protein: MVGIFSRLTSTRAGLRSQASSDEREGTPSGKDSPATLADNHGVEPTEEFKPVEHPLEPPDKDQPVRCPPPEPSILHDGRIWKERLEASARRRAEFPIIRESATQSQMLHRRRHTFSSEQSITPSFSCPEHSLLKLLDECSELVT*

Protein Length: 146

Fln nts: ATGGGTGGGGAGCTAGATCTGGGGATCTGAACATAGAGAGATCCCATAAAAGGTGCCTAGAAAGTGGCGTCCCTGATCCCCAGCTGAATGCAAGGAGCTCATTGAAGGCGGTATTCAATCATCCAATTTTACAGCCTCATAACTGAGAGGTTGAAAAGTGGGCATCGAGGATCACATATTCGGCCTCCCAGGCGTGTTGGA_-_ATGGTGGGGATCTTCTCACGCTTGACATCGACCAGGGCCGGTCTTCGGTCTCAGGCCTCATCTGATGAGAGGGAAGGTACCCCATCTGGAAAGGACTCACCGGCCACTTTGGCAGATAACCATGGAGTTGAACCTACAGAGGAATTCAAGCCAGTAGAACACCCACTAGAGCCCCCGGACAAGGATCAACCTGTCAGATGCCCCCCCCCTGAACCATCTATTCTCCATGATGGAAGAATATGGAAGGAAAGACTAGAGGCAAGTGCTCGGAGAAGAGCTGAATTCCCTATTATAAGAGAATCAGCAACTCAATCACAGATGTTGCACAGGAGGCGACATACATTTTCAAGCGAGCAGTCAATCACGCCTTCTTTCAGTTGTCCAGAGCACTCTCTACTAAAACTCCTGGATGAATGTAGCGAACTTGTAACATGA___AGGATTCACATGTGTGATGACCAAGAACATAACTTGTAGCTTTGAGACAAGTGTACTCTGTTCTCAAGTAACTTATATCGGAATAAACAAGGGAATTCAGGATTCATTTACATGTTTGCAATGCAACAAGGACAAGGAAAGTTGAGCCATCGGCCCCATGCATATGTATTATTGCTAGAAAGCCCGTTGTTAGCAACTTAGCAATTCTTCCCCGTGCAATCATTTGCATGATTGCAATGTAACAAGGACGAGGAAAGTGAGCAATCTAGGTCATGCTTTATGCATTATGCCAGAAAACCTGTTCGGATCAATTCTTACCCGTGCAATCTGTACACGTGTTGGAGCCTACAACTTTATTGAAACGCCTTCAAATCATCGTTCGCTCTACATGATGAAGTTGGAGGGATTAAAGCATAAAAATCTGTTTAGCTACGGCATAAAAATGTGGATCTTGTCTTGACACGAGTTGCTTCCAGTGGTCAAATTAATGGGTTTGTCAACGTTTCAGTCAACAGGTCCAACTTGCCTAAAGTTTCAAATTACCTGCCTTGCAATCTGCCAAAAAAAATATCTGAAAACGGAGAATGTCCTTGGGAGGTTAGACATATTTTCTTTTAAATCAGCCTACTATAATAAATATAATGATTATATATGGTCATGGTTT

Fln Alignment:

sp_v1.1_unigene32405___MVGIFSRLTSTRAGLRSQASSDEREGTPSGKDSPATLADNHGVEPTEEFKPVEHPLEPPDKDQPVRCPPPEPSILHDGRIWKXXXXXXXXXXXXFPIIRESATQSQMLHRRRHTFSSEQSITPSFSCPEHSLLKLLDECSE
A9NWK8_______________MVGIFSRLTSSRAGLRSQASTDEREGTPSGKDSPATLADNHGVEPTDEFKPVEHPLEPPDKDQPVRCPPPEPSILHDGTIWKERLEASARRRAEFPIIRESGSQSQMLHRRRHTFSSEQSIMPSFSCPEHSLLKLLDECNE

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
795		71		28	1.0
796	85		14		0.993533
802	14	85			0.993533
805		85		14	0.993533
806	85			14	0.993533
807			14	85	0.993533
811	85		14		0.993533
818	14		85		0.993533
829	83		16		0.994512
839		14		85	0.993533
940		12		87	0.992557
942	25	62		12	1.0
944	62	25			1.0
945			75	25	1.0
946	62			37	1.0
947	62		37		1.0
948	71		28		1.0
949	57	42			1.0
950		71		28	1.0
951		57	28	14	1.0
953		33	16		1.0
954	33		66		1.0
955		42		57	1.0
957		83	16		0.994512
958	28		57	14	1.0
959		16	83		0.994512
966	87	12			0.992556
967			12	87	0.992556
972			12	87	0.992556
976		87		12	0.992558
977			85	14	0.993533
978			14	85	0.993533
981	85			14	0.993533
982	85		14		0.993533
985	14			85	0.993533
986		14	85		0.993533
1023			11	88	0.923646
1028	88		11		0.923695
1030		88	11		0.923646
1034		37	62		1.0
1037		87	12		0.992554
1041		87	12		0.992554
1048		12	87		0.992554
1093	33		66		1.0
1140	40	60			1.0
1208		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain