SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32382

Length: 1121 nt

Origin of reads: Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene32382 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytokinin receptor 1 n=1 Tax=Physcomitrella patens RepID=Q27PX4_9BRYO	-	-	54%
FL-Next	sp=Histidine kinase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	cytokinin receptor 4-like protein	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histidine kinase.	EC:2.7.13.3	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	66%
Blast2go	response to salt stress	GO:0009651	Biological Process	66%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	66%
Blast2go	regulation of shoot development	GO:0048831	Biological Process	66%
Blast2go	regulation of chlorophyll catabolic process	GO:0010271	Biological Process	66%
Blast2go	regulation of seed germination	GO:0010029	Biological Process	66%
Blast2go	leaf senescence	GO:0010150	Biological Process	66%
Blast2go	response to cold	GO:0009409	Biological Process	66%
Blast2go	protein histidine kinase activity	GO:0004673	Molecular Function	66%
Blast2go	osmosensor activity	GO:0005034	Molecular Function	66%
Blast2go	protein binding	GO:0005515	Molecular Function	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5U1

Fln msg: Distance to subject end: 619 aas, your sequence is shorter than subject: 373 - 1036

Fln protein: VVTLAVTHQAQEQESKEESSKLLAGGWRGGTHGGHRTTGNGGTGVIHGLLSWQSIDGFLSERVGDKWNTMAVIVWVLLGSSVAIYSFYSMTRETSRRRQETLANMCDERARMLQDQFVASMNHVQALTVLVSTFHLEMKPSALYQDVFAAYTARTSFERPLMSGVAYAPRVLHKDREEFERQQGWSIKHMNTKETQAPQEEYAPTVFSQETVSYLISLDMMSGQHDRENI*ERARLVKGP*RLLLGWFPVI*DVTTFAVYSRGLPPDATPQQRTEATAGYLGGAFDVESLVENLLHQLAGNFPIIVNVYDTTNESFPVLMYGTGSDGYHISELDFGDPDRKHELHCGFSDDPKLPYTAIRTSGGIFVIIILVG

Protein Length: 374

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCAAGCACAGGAACAAGAATCCAAGGAGGAGAGCAGTAAGCTCCTCGCTGGGGGCTGGAGGGGTGGCACTCATGGAGGCCATAGGACCACTGGAAACGGAGGGACTGGAGTTATCCATGGGCTTTTGTCATGGCAGTCTATTGATGGATTTCTGAGCGAGCGCGTTGGCGACAAATGGAATACAATGGCGGTCATTGTGTGGGTTCTGCTGGGAAGCAGCGTGGCCATTTATAGTTTCTATTCCATGACCAGAGAGACTTCCAGGCGCCGCCAGGAGACTCTGGCTAATATGTGTGACGAGAGGGCTAGGATGTTGCAGGACCAGTTTGTTGCCAGCATGAACCACGTCCAAGCCCTCACGGTCCTCGTCTCCACATTTCATCTCGAGATGAAACCTTCTGCTCTCTATCAGGACGTTTTTGCTGCATACACGGCCCGGACTTCTTTTGAAAGACCGCTGATGAGCGGCGTGGCATACGCTCCACGAGTTCTTCATAAAGACCGGGAGGAGTTTGAGAGGCAGCAGGGATGGAGCATAAAGCATATGAATACAAAAGAGACTCAGGCTCCACAAGAGGAATACGCGCCCACTGTTTTCTCTCAGGAGACTGTGTCCTATCTCATTTCACTGGACATGATGTCAGGGCAGCATGATCGAGAGAATATTTGAGAGCGCGCGAGACTGGTAAAGGGGCCTTGACGACTCCTTTTAGGCTGGTTTCCAGTCATTTAGGATGTCACTACTTTTGCTGTGTATAGCAGAGGCCTTCCTCCAGACGCCACGCCTCAGCAACGTACTGAAGCCACTGCGGGGTACTTAGGTGGAGCCTTTGATGTAGAGTCATTGGTGGAGAATTTGTTACACCAGCTTGCGGGCAACTTCCCCATTATTGTAAATGTGTATGACACAACCAATGAATCTTTTCCTGTGCTGATGTATGGTACGGGCTCTGATGGCTACCACATAAGCGAACTGGATTTTGGAGATCCTGATAGAAAGCATGAACTGCATTGCGGCTTCTCGGATGATCCAAAACTTCCATATACAGCCATCAGAACATCTGGTGGCATATTTGTGATTATCATTCTTGTGGGAC

Fln Alignment:

sp_v1.1_unigene32382___SERVGDKWNTMAVIVWVLLGSSVAIYSFYSMTRETSRRRQETLANMCDERARMLQDQFVASMNHVQALTVLVSTFHLEMKPSALYQDVFAAYTARTSFERPLMSGVAYAPRVLHKDREEFERQQGWSIKHM---------------NTKETQAPQEEYAPTVFSQETVSYLISLDMMSGQHDRENI*ERARLVKGP*RLLLGWFPVI*D-----VTTFAVYSRGLPPDATPQQRTEATAGYLGGAFDVESLVENLLHQLAGNFPIIVNVYDTTNESFPVLMYGT--GSDGY-HISELDFGDPDRKHELHCGFSDDPKLPYTAIRTSGGIFVIIILV
Q9C5U1_______________SVKFNKAWWRKLVVVWVVFWVLVSIWTFWYFSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFSEYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALEPSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKG---VLTAPFPLIKTNRLGVILTFAVYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDITNHSQPISMYGTNVSADGLERVSPLIFGDPLRKHEMRCRFKQKPPWPVLSMVTSFGILVIALLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain