SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32339

Length: 466 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene32339
TGATCTGCCAAGTCTTATATATGTCTCTCGTGAGAAGCGACCTGGAATTTCCCACCATTATAAGGCTGGTGCTCTTAATGTTCTGCTTAGAGTCTCTGGCGTAATGAGCAATGCTCCCTTCATTCTCACTCTTGATTGCGACATGTACACCAACAATTCTGAGGCGCTTCGTCAAGCCATGTGCTTTTTCTTGGACCCTAAAACAGGTGACCAGTTTGGCTTCGTCCAATTTCCTCAAGTACTTCATGGCATCACGAAGAATGATATCTATGCAAATAGTCTCAGGATATTCGCCGAGATCGATTTTAAAGGACAAGATGGAATTGATGGTCCATTCTACGTAGGCACCGGATGCATTCACCGCAGGAAGGCCTTATGCGGGACTGAGCGACGACAGAGATTCTCAAATTATCATAAAGCCGCATCCACCATGTTTGCGCAGAAGAAACAGTTGCGAAAGATAAAG

Ace file of the UniGene sp_v1.1_unigene32339

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cesA5; cellulose synthase 5, glycosyltransferase family 2; K10999 cellulose synthase A [EC:2.4.1.12]	-	-	9.99967e-42	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	cellulose synthase catalytic subunit	-	-	0.0	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	9.99967e-42	53%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Starch and sucrose metabolism	00500		9.99967e-42	53%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cellulose synthase	IPR005150	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK55

Fln msg: Distance to subject end: 334 aas, your sequence is shorter than subject: 155 - 744

Fln protein: DLPSLIYVSREKRPGISHHYKAGALNVLLRVSGVMSNAPFILTLDCDMYTNNSEALRQAMCFFLDPKTGDQFGFVQFPQVLHGITKNDIYANSLRIFAEIDFKGQDGIDGPFYVGTGCIHRRKALCGTERRQRFSNYHKAASTMFAQKKQLRKIK

Protein Length: 156

Fln nts: TGATCTGCCAAGTCTTATATATGTCTCTCGTGAGAAGCGACCTGGAATTTCCCACCATTATAAGGCTGGTGCTCTTAATGTTCTGCTTAGAGTCTCTGGCGTAATGAGCAATGCTCCCTTCATTCTCACTCTTGATTGCGACATGTACACCAACAATTCTGAGGCGCTTCGTCAAGCCATGTGCTTTTTCTTGGACCCTAAAACAGGTGACCAGTTTGGCTTCGTCCAATTTCCTCAAGTACTTCATGGCATCACGAAGAATGATATCTATGCAAATAGTCTCAGGATATTCGCCGAGATCGATTTTAAAGGACAAGATGGAATTGATGGTCCATTCTACGTAGGCACCGGATGCATTCACCGCAGGAAGGCCTTATGCGGGACTGAGCGACGACAGAGATTCTCAAATTATCATAAAGCCGCATCCACCATGTTTGCGCAGAAGAAACAGTTGCGAAAGATAAAG

Fln Alignment:

sp_v1.1_unigene32339___DLPSLIYVSREKRPGISHHYKAGALNVLLRVSGVMSNAPFILTLDCDMYTNNSEALRQAMCFFLDPKTGDQFGFVQFPQVLHGITKNDIYANSLRIFAEIDFKGQDGIDGPFYVGTGCIHRRKALCGTERRQRFSNYHKAA
B8LK55_______________DMPGLIYVSREKRPGIPHHYKAGALNVLLRVSGVMSNAPFILTLDCDMYTNNSEALRQAMCFFLEPKTGHEFGYVQFPQTFHGITKNDLYANNLKTLLEIKYKGLDGIEGPFYIGTGCIHRRDVLCGSERRRSSPKYHKAA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
163	25		75		0.996473
291		33		66	0.997453
400	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain