SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32272

Length: 437 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene32272
TGCTGACTGATGATCGGGGTTATATATGTGGTGTCATGGCTGTTAATCCATCCTCGGGTTGTTGTCCTGAAGCTGGCGAACAATTTCCATGTCAGGGATGCAATATTAGTTCACAGTGTTGTGATTCTTATGAATTTTGTGTATCATGCTGCTTAAATCCAGCTCGGACACATGAAGAAACTGCAATTAAGATGAAGGTGGCTAAAACGGCTACTGCAGGCACCTATGGGAGTATTTTCAATTTTTGTGCTGGAAGGTGTCGTCATAATTCAGCAAGTGTGGTCCATGAGAATGCTTATGCCAGTGAAATGCATCACTGCTTTTCCTTTCAGCTAAATTCATCTGGTGTTGTCAAACCTCAATCTGAGGTGGAGTTTTCAGATATTTCCATCATAATTAGGCAGGCAAGGCCAATCATGCACCATGGCTTGCAAGTC

Ace file of the UniGene sp_v1.1_unigene32272

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF2054 domain containing protein	-	-	2.0e-39	45%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	61%
Blast2go	conserved hypothetical protein [Ricinus communis]	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised protein family UPF0454	IPR019352	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T5C3

Fln msg: Distance to subject end: 55 aas, your sequence is shorter than subject: 145 - 251

Fln protein: LTDDRGYICGVMAVNPSSGCCPEAGEQFPCQGCNISSQCCDSYEFCVSCCLNPARTHEETAIKMKVAKTATAGTYGSIFNFCAGRCRHNSASVVHENAYASEMHHCFSFQLNSSGVVKPQSEVEFSDISIIIRQARPIMHHGLQV

Protein Length: 146

Fln nts: TGCTGACTGATGATCGGGGTTATATATGTGGTGTCATGGCTGTTAATCCATCCTCGGGTTGTTGTCCTGAAGCTGGCGAACAATTTCCATGTCAGGGATGCAATATTAGTTCACAGTGTTGTGATTCTTATGAATTTTGTGTATCATGCTGCTTAAATCCAGCTCGGACACATGAAGAAACTGCAATTAAGATGAAGGTGGCTAAAACGGCTACTGCAGGCACCTATGGGAGTATTTTCAATTTTTGTGCTGGAAGGTGTCGTCATAATTCAGCAAGTGTGGTCCATGAGAATGCTTATGCCAGTGAAATGCATCACTGCTTTTCCTTTCAGCTAAATTCATCTGGTGTTGTCAAACCTCAATCTGAGGTGGAGTTTTCAGATATTTCCATCATAATTAGGCAGGCAAGGCCAATCATGCACCATGGCTTGCAAGTC

Fln Alignment:

sp_v1.1_unigene32272___LTDDRGYICGVMAVNPSSGCCPEAGEQFPCQGCNISSQCCDSYEFCVSCCLNPARTHEETAIKMKVAKTATAGTYGSIFNFCAGRCRHNSASVVHENAYASEMHHCFSFQLNSSGVVKPQSEVEFSDISIII
B9T5C3_______________LSDDNGHVCDALSLDPQSRCCPVRGEKFSCHGCNLLSHCCNSYEFCVSCCLNPARTQEEEVMKLKIAKPATAGTYTSTFDFCAGRCRHNSESVVHENAYLSDFHHCFSLPSNSTGANYRQLEARLVGINVII

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
310	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain