SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32224

Length: 597 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene32224

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lysyl-tRNA synthetase n=1 Tax=Ricinus communis RepID=B9SBP3_RICCO	-	-	5.0e-29	46%
FL-Next	sp=Lysyl-tRNA synthetase; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	46%
Blast2go	lysyl-trna synthetase	-	-	1.66966e-29	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	1.66966e-29	72%
Blast2go	ovule development	GO:0048481	Biological Process	1.66966e-29	72%
Blast2go	binding	GO:0005488	Molecular Function	1.66966e-29	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.66966e-29	72%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.66966e-29	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	1.66966e-29	72%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	1.66966e-29	72%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	1.66966e-29	72%
Blast2go	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	IPR018150	-	1.66966e-29	72%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
74	33	66			0.997461
81		66	33		0.997454
162			25	75	0.996481
163			25	75	0.996481
236	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain