SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32174

Length: 420 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene32174
CGTCGTGACCTTCGTCGTGACGTTGGATCCCAAAGCCACCTAAATATATTCTTCGTTTGGAGCTTCATCAGGAGGTGCAGAGTTCAAATATTGCGCGTACCAATTTTCCTTCCCCAAATGGCAAAGAGCGACGATGCTGCTGATGACGCCAAAAAAGGAGAGGAAGTCACTTGCATGGCTGAAAGATTGAGAATCCGGTCAGGAAAAAAACCATCTTATAATGAAGCAGAAGAAGTGGAGGATGAGCCAGATTGGAAGGAGCCGGAAGGAGAAACAATATATGCTGCGACCCAACCGTCCAAAATATTGAGAACAAATACAAGTGAAGATTCTTGTCTTGCATGTGGAGGCAGTGGAACCGTTGTTTGTTGTGATACATGTCCTGCTGTATACCATCTTAAGTGCTTGCTTCCACCACTG

Ace file of the UniGene sp_v1.1_unigene32174

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CHR1512; SNF2 family DNA-dependent ATPase; K11643 chromodomain-helicase-DNA-binding protein 4 [EC:3.6.1.-]	-	-	6.0e-13	42%
FL-Next	sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	41%
Blast2go	snf2 family dna-dependent atpase	-	-	1.47444e-12	58%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	6.0e-13	42%

Source	KEGGs	Term	e value	Identity
AutoFact	Purine metabolism	00230	6.0e-13	42%
AutoFact	Lipopolysaccharide biosynthesis	00540	6.0e-13	42%
AutoFact	Folate biosynthesis	00790	6.0e-13	42%
AutoFact	Metabolic pathways	01100	6.0e-13	42%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	1.47444e-12	58%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.47444e-12	58%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9S775

Fln msg: Distance to subject end: 1304 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 101 - 1384

Fln protein: MAKSDDAADDAKKGEEVTCMAERLRIRSGKKPSYNEAEEVEDEPDWKEPEGETIYAATQPSKILRTNTSEDSCLACGGSGTVVCCDTCPAVYHLKCLLPPL

Protein Length: 102

Fln nts: CGTCGTGACCTTCGTCGTGACGTTGGATCCCAAAGCCACCTAAATATATTCTTCGTTTGGAGCTTCATCAGGAGGTGCAGAGTTCAAATATTGCGCGTACCAATTTTCCTTCCCCAA_-_ATGGCAAAGAGCGACGATGCTGCTGATGACGCCAAAAAAGGAGAGGAAGTCACTTGCATGGCTGAAAGATTGAGAATCCGGTCAGGAAAAAAACCATCTTATAATGAAGCAGAAGAAGTGGAGGATGAGCCAGATTGGAAGGAGCCGGAAGGAGAAACAATATATGCTGCGACCCAACCGTCCAAAATATTGAGAACAAATACAAGTGAAGATTCTTGTCTTGCATGTGGAGGCAGTGGAACCGTTGTTTGTTGTGATACATGTCCTGCTGTATACCATCTTAAGTGCTTGCTTCCACCACTG

Fln Alignment:

sp_v1.1_unigene32174___VTCMAERLRIRSGKKPSYNEAEEVEDEPDWKEPEGETIYAATQPSKILRTNTSEDSCLACGGSGTVVCCDTCPAVYHLKCLLPPL
Q9S775_______________MSSLVERLRIRSDRKPVYNLDDS--DDDDFVPKKDRTF---EQVEAIVRTDAKENACQACGESTNLVSCNTCTYAFHAKCLVPPL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
21		60		40	1.0
22		40	40	20	1.0
23		20	40	40	1.0
24	20		40	40	1.0
27	60	40			1.0
29		60	40		1.0
30		60		40	1.0
34	60	40			1.0
35			60	40	1.0
37	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
21		60		40	1.0
22		40	40	20	1.0
23		20	40	40	1.0
24	20		40	40	1.0
27	60	40			1.0
29		60	40		1.0
30		60		40	1.0
34	60	40			1.0
35			60	40	1.0
37	50	50			1.0

Position	A %	C %	G %	T %	Probability
21		60		40	1.0
22		40	40	20	1.0
23		20	40	40	1.0
24	20		40	40	1.0
27	60	40			1.0
29		60	40		1.0
30		60		40	1.0
34	60	40			1.0
35			60	40	1.0
37	50	50			1.0

Position	A %	C %	G %	T %	Probability
21		60		40	1.0
22		40	40	20	1.0
23		20	40	40	1.0
24	20		40	40	1.0
27	60	40			1.0
29		60	40		1.0
30		60		40	1.0
34	60	40			1.0
35			60	40	1.0
37	50	50			1.0