SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32142

Length: 478 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene32142
GTCATTGCAAGCTAGTGCTTTGGGAGTGGAGTTTACAGCCGGAAGCATGTATCCTAAATGGAGTGCTTCATTGATCGTTGCCAAAGTTGATACTGTCTGTGCATTATATGATTCTAATCAGTCCAGCAGCAACAGGGGCATAAAATGGACAATAGTTTGCTTTAACTATATTAATCTGAATGATTTCCTGATCTTGAATATTGTGTAGAGGTGGCACTTTTTTGTTTACTTTCAAGGTGTCTCCACTTTACCCCCACGATGCACCGAAGGTGAAATGTAAGACAAAGATTTACCACCACAATATTGACTTGGAAGGCAATGTGTGCCTCAATATTGTCCGTGAAGACTGGAAGCCTGTCCTGAATATCAACACCATCATTTATGCGTTGTATCATCTCTTCACACAACCAAATCACGAGTATCCCCTTAACCAGGAAGCTGCTGCTGTGATGAGAGATAATCCAAAATCTTTCAGAAG

Ace file of the UniGene sp_v1.1_unigene32142

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=D5ABW6_PICSI	-	-	6.00036e-42	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	ubiquitin-conjugating enzyme	-	-	1.13477e-41	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	CAAX-box protein maturation	GO:0080120	Biological Process	1.13477e-41	92%
Blast2go	protein maturation by peptide bond cleavage	GO:0051605	Biological Process	1.13477e-41	92%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	1.13477e-41	92%
Blast2go	embryo development	GO:0009790	Biological Process	1.13477e-41	92%
Blast2go	cellular protein localization	GO:0034613	Biological Process	1.13477e-41	92%
Blast2go	endopeptidase activity	GO:0004175	Molecular Function	1.13477e-41	92%
Blast2go	protein binding	GO:0005515	Molecular Function	1.13477e-41	92%
Blast2go	small conjugating protein ligase activity	GO:0019787	Molecular Function	1.13477e-41	92%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	1.13477e-41	92%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABW6

Fln msg: Distance to subject end: 23 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 93 - 128

Fln protein: ILCRGGTFLFTFKVSPLYPHDAPKVKCKTKIYHHNIDLEGNVCLNIVREDWKPVLNINTIIYALYHLFTQPNHEYPLNQEAAAVMRDNPKSFR

Protein Length: 94

Fln nts: GTCATTGCAAGCTAGTGCTTTGGGAGTGGAGTTTACAGCCGGAAGCATGTATCCTAAATGGAGTGCTTCATTGATCGTTGCCAAAGTTGATACTGTCTGTGCATTATATGATTCTAATCAGTCCAGCAGCAACAGGGGCATAAAATGGACAATAGTTTGCTTTAACTATATTAATCTGAATGATTTCCTGATCTTGAATATTGTGTAGAGGTGGCACTTTTTTGTTTACTTTCAAGGTGTCTCCACTTTACCCCCACGATGCACCGAAGGTGAAATGTAAGACAAAGATTTACCACCACAATATTGACTTGGAAGGCAATGTGTGCCTCAATATTGTCCGTGAAGACTGGAAGCCTGTCCTGAATATCAACACCATCATTTATGCGTTGTATCATCTCTTCACACAACCAAATCACGAGTATCCCCTTAACCAGGAAGCTGCTGCTGTGATGAGAGATAATCCAAAATCTTTCAGAAG

Fln Alignment:

sp_v1.1_unigene32142___RGGTFLFTFKVSPLYPHDAPKVKCKTKIYHHNIDLEGNVCLNIVREDWKPVLNINTIIYALYHLFTQPNHEYPLNQEAAAVMRDNPKSF
D5ABW6_______________QGGSFLFTFQVSPIYPHDAPKVKCMTKVYHPNIDLEGNVCLNILREDWKPVLNINTIVYGLYHLFTQPNHEDPLNHEAAAVMRDNPKSF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
337		33	66		0.997458

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain