SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32130

Length: 444 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene32130
CGTCGTGACCTTGGCTGTCACTCAAATGTCTTTTGATGCAGAGAGTTTACAAAGATGTGCAATGATGAGAACAAAAGAACGTGTGACCTTGGTTGTCACTTGCTGAAGCTCTCTTTGGAAGGTCAGTTGTACATATTGCAGCAGATGGAACGATAACTTTTGCAAATGATGATGTACTCAGGTTAACATATTCCAGTTTGAGGAGGCTACTGTTGGAGGCTGTTGCGTTTGGTTCTTTCCTTTGGGACGTGGAAGGCTACGTTGATTCCATATACACACTCTCTGATAACTGAGTCTGCCAGGCATCTGCTATAAGAAATGGAAATGTTGAAAAAATGCGTAATACTCCTATGGGCGTGTTTTTCTTCTGTTGTCAAGGATTCCCTTGTCTAATTTTTCTTTGTAACATATCTGTACAGTATATAGAATGATGATGCAATTTAC

Ace file of the UniGene sp_v1.1_unigene32130

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF760 domain containing protein	-	-	4.0e-21	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	unknown [Picea sitchensis]	-	-	4.49524e-22	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC1

Fln msg: Separated hits, possible frame ERROR between 94 and 102, your sequence is shorter than subject: 98 - 420

Fln protein: VVTLAVTQMSFDAESLQRCAMMRTKERVTLxxxxAEALFGRSVVHIAADGTITFANDDVLRLTYSSLRRLLLEAVAFGSFLWDVEGYVDSIYTLSDN*

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGTCTTTTGATGCAGAGAGTTTACAAAGATGTGCAATGATGAGAACAAAAGAACGTGTGACCTTGGTxxxxxxxxxTGCTGAAGCTCTCTTTGGAAGGTCAGTTGTACATATTGCAGCAGATGGAACGATAACTTTTGCAAATGATGATGTACTCAGGTTAACATATTCCAGTTTGAGGAGGCTACTGTTGGAGGCTGTTGCGTTTGGTTCTTTCCTTTGGGACGTGGAAGGCTACGTTGATTCCATATACACACTCTCTGATAACTGAGTCTGCCAGGCATCTGCTATAAGAAATGGAAATGTTGAAAAAATGCGTAATACTCCTATGGGCGTGTTTTTCTTCTGTTGTCAAGGATTCCCTTGTCTAATTTTTCTTTGTAACATATCTGTACAGTATATAGAATGATGATGCAATTTAC

Fln Alignment:

sp_v1.1_unigene32130___MSFDAESLQRCAMMRTKERVTLVxxxAEALFGRSVVHIAADGTITFANDDVXXXXXXXXXXXXXEAVAFGSFLWDVEGYVDSIYTLSDN
B8LKC1_______________MSFDAESLQRCAMMRTKESVNMVxxxAEALFGRPVIHIAADGTTTFAHDDALRLTYSSLKRLLLEAVAFGSLLWDVEGYVGSIYTLSDN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain