SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32036

Length: 1332 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene32036

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc ion binding	-	-	1.0e-27	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	zinc ion binding protein	-	-	1.88651e-29	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin	IPR000626	-	1.88651e-29	59%
Blast2go	Ubiquitin supergroup	IPR019955	-	1.88651e-29	59%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQD9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 75 aas, putative chimeric sequence, your sequence is shorter than subject: 329 - 403

Fln protein: MKVSVRIFMGKHFDIEVQPTDTVLNVKKQIEQIQGAQNHPSEQQRLIYKRKELMDKTTIKQNKVSENAILVVKLSKMLTYRGMTYHVQNPHTEEFSAADIVWIKGVGKKGIVHDVAVIPYYRLDNFVKGEGSSARTKFCLTACKTKEDSSDKKRVDAILKTATYCCSYGIEDHRKGGTIRPSRKCTELSKKKCRGRALIKQGCLSNFCMARYVACPFVAFIKYKKREHVDKSGSACCHKPLDDKAIGTQFMTKPSNHGGTDPPLTLGPSNHKLTLGPSNHKGINLPPVWNVKKIRSKLGTQGKVSTAEGDNKANGHKIASDSPTMRAT*

Protein Length: 330

Fln nts: ATGGGGGTTGGTTTCTTTGGCAGTGCAAGCGATATTGTGTCTCGTTTTGCCTGCTGTGCGGACGGTTTAGCACTTCGGAGGCCGGTAGGGACCGAATTCGGGCGTCAGG_-_ATGAAGGTTTCTGTCCGAATCTTCATGGGTAAACACTTTGATATAGAGGTGCAGCCCACGGATACTGTTTTAAATGTTAAGAAACAAATAGAGCAAATTCAAGGAGCACAAAATCACCCGAGTGAACAGCAGCGGCTGATTTATAAGCGCAAGGAGCTGATGGATAAAACCACTATTAAACAAAACAAAGTCAGTGAGAATGCAATCCTTGTGGTTAAGCTGTCTAAGATGTTAACATACCGTGGGATGACATATCATGTGCAAAACCCACACACTGAAGAGTTTTCAGCAGCTGATATTGTCTGGATTAAGGGTGTGGGTAAGAAAGGAATTGTTCATGATGTTGCTGTCATTCCATATTACAGATTGGATAATTTTGTTAAGGGAGAGGGTTCCAGTGCTCGAACCAAATTTTGTCTTACTGCATGTAAAACAAAAGAAGACAGTTCAGATAAGAAAAGAGTTGATGCCATTCTTAAAACTGCAACATATTGTTGCAGTTATGGCATTGAAGACCACAGGAAGGGTGGAACGATTCGGCCTAGCAGAAAGTGTACTGAACTATCAAAGAAAAAATGTAGAGGACGAGCACTTATAAAGCAAGGCTGTTTGTCTAATTTTTGTATGGCACGCTATGTTGCTTGCCCATTTGTTGCCTTTATAAAATACAAGAAACGAGAGCATGTTGATAAGTCTGGTTCTGCTTGTTGCCACAAACCGCTTGATGACAAGGCCATTGGAACACAGTTCATGACAAAGCCATCAAACCATGGAGGTACAGACCCTCCACTTACACTGGGGCCATCAAACCACAAACTTACACTGGGGCCATCAAACCACAAAGGTATAAACCTTCCACCTGTGTGGAATGTCAAGAAGATTAGATCTAAATTAGGAACTCAAGGTAAAGTGAGTACTGCAGAAGGTGACAATAAAGCTAATGGCCACAAAATTGCCTCGGACTCTCCAACCATGAGGGCCACTTGA___GCAGACAAGTTTCTGTCGGGAGTTTCTTCGCCTCTGTTACACGCATTTAGAATCTTGAATTTGCACCTTCTTTTATATTTTCTCTCGGCTAGATTTAACCTTTAACTGGAGACTCTGTTCTTTGTCTTTTATGCATTTAGTATTGATCTTGGACTTGGTTTTGCATTCCGACATTGCATTTATGTTGGATATACTATTTCATCTCATATTATTTATTTAACTCTGTATTGCTCTTT

Fln Alignment:

sp_v1.1_unigene32036___MKVSVRIFMGKHFDIEVQPTDTVLNVKKQIEQIQGAQNHPSEQQRLIYKRKELMDKTTIKQNKVSENAILVVKLSK
C0PQD9_______________MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIEENKVTENTFLVVMLSK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain