SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31978

Length: 516 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene31978
GTTTCTTATTCTTCATACTGCATTTCTGCTGTTACTAACTAATTTCTGCAGAGATCTGTATCTAAGTAATTGATTACTTTTTGGCTTTGCCTCGCTTGTTGGCGATTAAATTGATTATAGTTGATATCATGGCCAACGTACTGGCATTGACACTAGCATTTATAGTCATAGCGGCAGGGGGAAGTGTGGGCAGGGTGGCAGCTCAGTCTTCGTCTTCATGTAGCGCTGCTTTGGTGAGTTTGGCGCCGTGCCTCGCCTTCTTGCAGGGAGGAGCAAACAACAGTAGTCCAACACAGGGCTGCTGCACCGGCCTTGCCTCCGTCGTCAGCACCAGCGCTGCCTGTCTCTGCCAGATGGTTACTACAACCAACAATCCCCTGGGGATTCCTATCAACCAAACTCAGGCCCTTGCTCTCCCAGGCGCCTGCAAAATTACTACTCCTCCTGTCAGCCAATGCAAATCAACTTCTGCTTCGAATCCTCCTGCTGCGGCGGCCCCTTCGTCTCCAACTCCGG

Ace file of the UniGene sp_v1.1_unigene31978

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=2 Tax=Picea sitchensis RepID=A9NNU8_PICSI	-	-	2.0e-15	53%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	protein	-	-	3.39423e-15	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant lipid transfer protein/Par allergen	IPR000528	-	3.39423e-15	73%
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	3.39423e-15	73%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	3.39423e-15	73%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	3.39423e-15	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNU8

Fln msg: Distance to subject end: 141 aas, your sequence is shorter than subject: 129 - 272

Fln protein: MANVLALTLAFIVIAAGGSVGRVAAQSSSSCSAALVSLAPCLAFLQGGANNSSPTQGCCTGLASVVSTSAACLCQMVTTTNNPLGIPINQTQALALPGACKITTPPVSQCKSTSASNPPAAAAPSSPTP

Protein Length: 130

Fln nts: GTTTCTTATTCTTCATACTGCATTTCTGCTGTTACTAACTAATTTCTGCAGAGATCTGTATCTAAGTAATTGATTACTTTTTGGCTTTGCCTCGCTTGTTGGCGATTAAATTGATTATAGTTGATATC_-_ATGGCCAACGTACTGGCATTGACACTAGCATTTATAGTCATAGCGGCAGGGGGAAGTGTGGGCAGGGTGGCAGCTCAGTCTTCGTCTTCATGTAGCGCTGCTTTGGTGAGTTTGGCGCCGTGCCTCGCCTTCTTGCAGGGAGGAGCAAACAACAGTAGTCCAACACAGGGCTGCTGCACCGGCCTTGCCTCCGTCGTCAGCACCAGCGCTGCCTGTCTCTGCCAGATGGTTACTACAACCAACAATCCCCTGGGGATTCCTATCAACCAAACTCAGGCCCTTGCTCTCCCAGGCGCCTGCAAAATTACTACTCCTCCTGTCAGCCAATGCAAATCAACTTCTGCTTCGAATCCTCCTGCTGCGGCGGCCCCTTCGTCTCCAACTCCGG

Fln Alignment:

sp_v1.1_unigene31978___FLQGGANNSSPTQGCCTGLASVVSTSAACLCQMVTTTNNPLGIPINQTQALALPGACKITTPPVSQC
A9NNU8_______________FVMTSSNETKPGNDCCTALSAIVSTKVLCLCQVLSGNNN-LGLPINRTKALALPGACNVKTPPISQC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
180	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain