SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31925

Length: 892 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31925

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PPR domain containing protein	-	-	2.0e-05	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	protein	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	72%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	0.0	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 285 - 370

Fln protein: MQRSGIEPNDYTFASILIACSNISVLEKGKQVHALIIKAGFESHISVKSGLVTMYSKCGSIEDAQQTFDSLDKGDVVSWTAIIAAYAQHGPGTEALKLFGQMQQQGVKPDHVTLIGLLSACSNAGLVDEGWHYFNSMDKDHGIEPTVEHYACIVDLFGRAGRLDEAEDFINKMPLKPDAVVWGALLGACKVHGNIELGKRVSECLLELEPQCVGTHILLANMYAADGRWVDAVNVRQIMKDKGLRKQPGRSWIEVQNTVHTFVADDKSHPQSREIYAMLDRLLEQ

Protein Length: 286

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGCTTTTCAA_-_ATGCAAAGATCAGGAATCGAGCCTAATGATTACACCTTTGCTAGCATTCTTATTGCATGTTCCAACATATCAGTCCTTGAAAAGGGAAAACAGGTGCATGCCCTTATCATTAAGGCTGGATTTGAGTCACATATTTCTGTTAAGAGCGGCCTTGTTACAATGTATTCAAAATGTGGAAGCATAGAAGATGCCCAACAAACATTTGATTCATTGGACAAAGGAGATGTGGTTTCTTGGACTGCAATCATTGCAGCATATGCTCAGCACGGGCCTGGTACAGAGGCACTCAAACTTTTTGGACAAATGCAACAACAAGGTGTAAAGCCAGACCATGTCACCCTTATTGGTCTTCTCTCTGCTTGTAGTAATGCAGGTCTAGTAGATGAAGGCTGGCACTATTTTAATTCCATGGATAAAGATCATGGTATTGAACCAACGGTGGAACACTATGCTTGTATAGTTGATCTTTTTGGTCGGGCTGGGCGCTTGGATGAAGCAGAGGACTTTATTAACAAAATGCCATTGAAACCTGATGCTGTTGTCTGGGGAGCATTGCTTGGCGCCTGCAAAGTCCATGGCAATATTGAGCTAGGAAAGCGCGTATCAGAATGCCTTCTTGAGTTGGAACCACAATGTGTGGGAACACACATACTACTTGCAAACATGTATGCTGCAGATGGCAGGTGGGTTGATGCAGTGAATGTGAGACAGATTATGAAGGACAAGGGGTTGAGAAAACAACCTGGACGTTCTTGGATTGAGGTGCAGAATACAGTGCATACATTTGTTGCAGATGACAAATCACATCCACAATCGAGGGAGATTTATGCTATGCTAGATCGATTACTTGAGCAAAT

Fln Alignment:

sp_v1.1_unigene31925___ASILIACSNISVLEKGKQVHALIIKAGFESHISVKSGLVTMYSKCGSIEDAQQTFDSLDKGDVVSWTAIIAAYAQHGPGTEALKLFGQMQQQGVKPDHVTLIGLLSACSNAGLVDEGWHYFNSMDKDHGIEPTVEHYACIVDLFGRAGRLDEAEDFINKMPLKPDAVVWGALLGACKVHGNIELGKRVSECLLELEPQCVGTHILLANMYAADGRWVDAVNVRQIMKDKGLRKQPGRSWIEVQNTVHTFVADDKSHPQSREIYAMLDRLLEQ
A9P0W0_______________AGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
639		75		25	0.996473
711		33		66	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain