SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31826

Length: 534 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene31826
GCGGGCGTCGCTAGGAATTCTGAAGGGAGGGCGTAGGTATTTGATGGTGGTCGTCTCGGGAGGTCTCAATCAGCAGCGCAATCAGATCGTCGACGCGGTTGTCATTGCCAGAATTCTGCAGGCGGCTCTGGTTATTCCCATTCTGCAAGTCAATGCTGTTTGGGAGGACGACAGTGAATTCTCGGATATCTTCGACGTCGAGCATTTCAAGAAAACTCTGAAAGACGACGTCCGAATCGTTTCTTCGCTGCCTTCCACTCATTTGATGTCGAGGCCCGTGGAGGAGAAGATAACTCCTCTTCACGTTAGCCCCCGCTGGATTCGATCTCGGTACCTCAGGCGGTTGAACAAAGAAGGAGTTCTGCTTCTTCGAGGATTGGATTCGAGACTTTCCAAGGATCTTCCTCCCGATCTTCAGAAACTCCGCTGCAAGGTCGCCTTCGACGCCTTAAGATTTGCAGCACCAATTCAAGCTCTGGGGAACAGGATTGCGAAGAGGATGTGGGAAACAGGCCCCTACATAGCTCTGCATTT

Ace file of the UniGene sp_v1.1_unigene31826 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-FucT domain containing protein	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GDP-fucose protein O-fucosyltransferase	IPR019378	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ81

Fln msg: Distance to subject end: 236 aas, your sequence is shorter than subject: 177 - 634

Fln protein: RASLGILKGGRRYLMVVVSGGLNQQRNQIVDAVVIARILQAALVIPILQVNAVWEDDSEFSDIFDVEHFKKTLKDDVRIVSSLPSTHLMSRPVEEKITPLHVSPRWIRSRYLRRLNKEGVLLLRGLDSRLSKDLPPDLQKLRCKVAFDALRFAAPIQALGNRIAKRMWETGPYIALH

Protein Length: 178

Fln nts: GCGGGCGTCGCTAGGAATTCTGAAGGGAGGGCGTAGGTATTTGATGGTGGTCGTCTCGGGAGGTCTCAATCAGCAGCGCAATCAGATCGTCGACGCGGTTGTCATTGCCAGAATTCTGCAGGCGGCTCTGGTTATTCCCATTCTGCAAGTCAATGCTGTTTGGGAGGACGACAGTGAATTCTCGGATATCTTCGACGTCGAGCATTTCAAGAAAACTCTGAAAGACGACGTCCGAATCGTTTCTTCGCTGCCTTCCACTCATTTGATGTCGAGGCCCGTGGAGGAGAAGATAACTCCTCTTCACGTTAGCCCCCGCTGGATTCGATCTCGGTACCTCAGGCGGTTGAACAAAGAAGGAGTTCTGCTTCTTCGAGGATTGGATTCGAGACTTTCCAAGGATCTTCCTCCCGATCTTCAGAAACTCCGCTGCAAGGTCGCCTTCGACGCCTTAAGATTTGCAGCACCAATTCAAGCTCTGGGGAACAGGATTGCGAAGAGGATGTGGGAAACAGGCCCCTACATAGCTCTGCATTT

Fln Alignment:

sp_v1.1_unigene31826___LKGGRR-YLMVVVSGGLNQQRNQIVDAVVIARILQAALVIPILQVNAVWEDDSEFSDIFDVEHFKKTLKDDVRIVSSLPSTHLMSRPVEEKITPLHVSP-RWIRSRY-----LRRLNKEGVLLLRGLDSRLSKD-LPPDLQKLRCKVAFDALRFAAPIQALGNRIAKRMWETG-PYIALH
B8LQ81_______________LEGGTNGFLLVHANGGLNQMRTGICDMVAVARIMNATLVLPSLDHSSFWTDPSDFEDIFDWHHFTKTLREDVRIVKSLPASY-------AKIEPLQKAPISWSKHTYYKDEMLPLLKKQKVIHFTHTDSRLANNGLPNSIQKLRCRTNYQALRYTQSIEELGKKLVARMRKNGKPYIALH

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
150	33	66			0.997454
294	75	25			0.996474
299		25		75	0.996473
301		75	25		0.996473
302			75	25	0.996473
306	25		75		0.996473
309	25		75		0.996473
310		25		75	0.996474
315	25	75			0.996473
319	25		75		0.996473
327	25		75		0.996473
333		75		25	0.996473
342	25		75		0.996473
351		75		25	0.996473
357		25		75	0.996473
360	75		25		0.996473
366	25		75		0.996473
378	75	25			0.996473
390		75		25	0.996473
416		25	75		0.996473
432		25	75		0.996474
474	33			66	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain