SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31804

Length: 1653 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31804

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase (Fragment) n=4 Tax=Vitis vinifera RepID=D7U236_VITVI	-	-	64%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	lipoxygenase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	77%
Blast2go	alpha-Linolenic acid metabolism	00592	77%
Blast2go	Biosynthesis of plant hormones	01070	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	77%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	77%
Blast2go	metabolic process	GO:0008152	Biological Process	77%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	77%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	77%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Blast2go	Lipoxygenase	IPR000907	-	77%
Blast2go	Lipoxygenase, plant	IPR001246	-	77%
Blast2go	Lipoxygenase, C-terminal	IPR013819	-	77%
Blast2go	Lipoxygenase, conserved site	IPR020834	-	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT31

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 550 - 924

Fln protein: TLGVAQFLVPELKIAIRFNPNEFDSFEDVMKLYSDGIKLSENPILDAAKNLIPLELIREFLTTDGQKLLKYPLPQVISNDKFAWRKDEEFARQTLAGVDPVVIQRLKSFPPRSKLDPGTYGPQISSITSSHIEKNIDGLTVEQALEDNKLFILDHHDVFMPYVNRINALSRKIYASRTILFLNKDGTLRPVAIELSLPPSDQRPASVRKVFTPAEEGAEGALWQLAKAYVAVNDSGYHQLISHWLKTHAVTEPFVIATNRQLSVMHPVYKLLSPHFRGTMNINALARQILINGGGILERTVFPGKYAMEMSAVAYKGWRFDEQGLPADLLKRGMAVVDSSMPHGLKLIIEDYPYAVDGLEIWFAIVSWVKEYLSLYYQKDDAVKSDRELQAWWTEIRNVGHGDKKDETWWYSMDNVEDVEKAITTIIWVASALHAAVNFGQYPYAGYMPNRPTISRRLIPEERSEEFSELVQNPDLFLLRTISNQFETTLGIALIEILSTHSTDEVYLGQRATSEWSEAERVTEAFERFGMKLKELEKNIRERNEDAEKL

Protein Length: 551

Fln nts: TACATTGGGAGTCGCCCAATTCTTGGTGCCAGAGCTCAAAATCGCTATTCGATTCAACCCCAACGAATTCGACTCATTTGAAGACGTTATGAAGCTTTACTCCGATGGGATCAAGCTGTCGGAGAATCCAATTCTCGACGCTGCGAAGAATCTCATTCCTCTTGAGCTCATCAGGGAGTTCCTCACGACAGATGGCCAAAAATTGCTGAAGTATCCCCTTCCTCAGGTTATTTCCAATGACAAATTTGCATGGAGGAAAGACGAAGAGTTTGCGCGGCAGACGTTGGCTGGTGTCGATCCGGTTGTTATACAGAGACTCAAAAGTTTTCCCCCAAGAAGTAAACTGGACCCGGGGACGTATGGTCCTCAGATCAGTTCTATTACTTCTTCACATATAGAAAAGAATATCGATGGGCTAACAGTGGAGCAGGCTCTAGAGGACAACAAGTTGTTCATTCTGGACCATCATGATGTCTTCATGCCTTATGTTAACCGAATAAATGCTCTGTCTAGAAAGATATATGCTTCTCGCACAATTCTGTTCCTTAACAAGGATGGCACATTAAGGCCAGTAGCAATCGAGCTGAGTCTACCCCCTTCAGATCAACGCCCGGCAAGTGTTCGTAAGGTGTTTACTCCTGCAGAGGAAGGAGCAGAAGGAGCTTTATGGCAGCTCGCCAAGGCCTATGTAGCCGTTAATGATTCTGGTTACCATCAGCTTATAAGTCACTGGCTTAAGACTCACGCAGTCACGGAGCCATTTGTCATCGCTACCAACAGACAGCTGAGTGTGATGCATCCCGTGTATAAGCTACTGAGCCCCCATTTCAGGGGCACCATGAACATCAACGCTCTGGCTCGCCAAATTCTTATAAATGGCGGAGGCATTCTTGAAAGAACAGTGTTTCCTGGAAAGTATGCCATGGAGATGTCCGCGGTAGCATACAAGGGCTGGAGGTTTGACGAACAAGGGTTGCCTGCAGATCTTCTCAAAAGGGGTATGGCAGTGGTGGACTCATCAATGCCCCACGGACTTAAGCTGATAATCGAAGACTACCCTTATGCTGTGGATGGATTGGAGATATGGTTCGCAATAGTGTCATGGGTTAAGGAGTACCTGTCCTTGTACTATCAGAAAGATGATGCAGTGAAATCTGATAGGGAGCTTCAAGCATGGTGGACCGAAATCAGAAATGTGGGTCACGGAGACAAGAAGGACGAGACATGGTGGTACAGCATGGACAACGTGGAAGATGTTGAAAAGGCAATAACAACAATCATATGGGTGGCCTCTGCTCTTCACGCTGCAGTTAATTTCGGGCAATACCCATACGCAGGATACATGCCAAATCGGCCCACCATCAGCAGAAGGTTAATTCCGGAAGAAAGGTCTGAAGAATTCTCCGAGCTGGTGCAGAATCCGGACTTGTTTTTGCTGAGAACGATAAGCAACCAATTTGAAACGACACTGGGCATAGCGTTGATAGAAATTCTGTCCACGCACTCCACAGACGAAGTATATCTAGGACAAAGAGCCACGAGTGAATGGAGTGAGGCTGAACGTGTAACAGAAGCTTTTGAACGCTTCGGTATGAAGCTGAAAGAGCTTGAGAAAAATATAAGAGAGAGAAACGAAGATGCAGAAAAGTTGAA

Fln Alignment:

sp_v1.1_unigene31804___LVPELKIAIRFNPN-EFDSFEDVMKLYSDG--IKLSENPILDAAKNLIPLELIREFLTTDGQKLLKYPLPQVISNDKFAWRKDEEFARQTLAGVDPVVIQRLKSFPPRSKLDPGTYGPQISSITSSHIEKNIDGLTVEQALEDNKLFILDHHDVFMPYVNRINALS-RKIYASRTILFLNKDGTLRPVAIELSLPPSDQRPASVRKVFTPAEEGAEGALWQLAKAYVAVNDSGYHQLISHWLKTHAVTEPFVIATNRQLSVMHPVYKLLSPHFRGTMNINALARQILINGGGILERTVFPGKYAMEMSAVAY-KGWRFDEQGLPADLLKRGMAVVDSSMPHGLKLIIEDYPYAVDGLEIWFAIVSWVKEYLSLYYQKDDAVKSDRELQAWWTEIRNVGHGDKKDETWWYSMDNVEDVEKAITTIIWVASALHAAVNFGQYPYAGYMPNRPTISRRLIPEERSEEFSELVQNPDLFLLRTISNQFETTLGIALIEILSTHSTDEVYLGQRATSEWSEAERVTEAFERFGMKLKELEKNIRERNED
C0PT31_______________LVPSL-IASFSNPNYEFGCFSDIDRLYREGQIIKFEAHQ-LDIFKNLMLPKIMKNMLKT-GEELLRYEIPSIISRDRFAWLRDNEFGRQTLAGVNPVSIERLKEFPIFSKLDPAIYGSPESAIKSEHVEGELNGMSVEQALEEERLFILDYYDAYMPFVTKINSLKGRKVYASRTIFFLTTAGTLKPIVIELSLPPT-VTGAQSKQIFTHGHDATSYWLWKLAKSHVCANDAGYHQLVNHWLRTHACMEPYIIAANRQLSCMHPIFKLLQPHLRYTMEINALARQSLINGGGVIESCFTPDKYSMELSASAYDRKWRFDMEALPADLIARGMAVEDPNQPHGLRLVIEDYPYAADGLLIWSAIEEWVEDYVSIYYSEPNSVQTDIELQAWWDEILNKGHYDKRNASWWPNLKTKEDLAGILTTMIWVASGQHAALNFGQYPYGGYVPNRPCIMRKLIPNETDPEYKSFLSNPQNFFLSSMPTQLQATKTMAVVDTLSTHSPDEEYLGERHESKWTNDGRALEAFQRFSAKIQEVEKIIEQRNED

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
478		33		66	0.997452
614	20		80		0.995493
615		80		20	0.995493
616		80	20		0.995493
617		80	20		0.995493
756		71	28		1.0
786	85		14		0.993533
884	83		16		0.994512
960	40		60		1.0
969	16			83	0.994512
972	83		16		0.994512
973		83	16		0.994512
1095	80		20		0.995493
1096			20	80	0.995493
1123			83	16	0.994512
1124			83	16	0.994512
1125	80		20		0.995493
1127			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain