SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31790

Length: 1175 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene31790 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cys-rich domain protein (Fragment) n=1 Tax=Citrus trifoliata RepID=Q5ECI6_PONTR	-	-	1.4013e-45	58%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	50%
Blast2go	cys-rich domain protein	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised protein family Cys-rich	IPR006461	-	0.0	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9T6C2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 257 - 576

Fln protein: S*PWLSLIVWNMDRLGFGNMYVHIVTFILLCMAPYWIFTLAAVNIGNENIREGLGITGIILCVFGLLYGGFWRIQMRKRFGLPGNGCCCGQPNVTDLMQWLFCGVCSLCQEVRTGNFYEVGEDKLYSKEYLGQDSQDLRDASPSLAPLGHEPGSPALNSPSWVKSDLSRNLNAQASVAPVLSPMHYSIENSLPPQGMPLVREGSTFPSSNFLSAETHITISPESESEDAHNVAAQTENLKRDGYPMNAPIPQSLEK*

Protein Length: 258

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTGTGGAATATGGATAGACTAGGGTTTGGGAACATGTATGTGCACATAGTGACCTTCATTTTGTTGTGCATGGCTCCTTATTGGATCTTCACCTTGGCTGCTGTCAATATTGGTAATGAGAATATTAGGGAAGGTCTTGGTATCACTGGGATCATTCTTTGCGTGTTTGGGCTTCTGTACGGTGGGTTTTGGAGGATTCAGATGCGGAAGAGGTTTGGCTTACCTGGAAATGGCTGCTGTTGTGGGCAGCCCAATGTGACAGATCTAATGCAGTGGCTTTTCTGCGGTGTTTGTTCTCTCTGTCAGGAGGTTCGCACTGGAAATTTCTATGAGGTCGGCGAGGATAAACTCTATTCTAAAGAATATCTTGGCCAAGATTCACAAGACCTGAGAGATGCTTCACCGAGTTTGGCTCCGTTGGGTCATGAACCAGGATCACCAGCTTTGAATTCACCCTCTTGGGTCAAATCAGACTTGTCACGAAATTTGAATGCTCAAGCTTCAGTTGCGCCAGTTTTGAGTCCAATGCATTATTCCATTGAAAACTCTCTTCCTCCACAGGGTATGCCCCTTGTGCGGGAAGGGTCGACATTCCCTTCGTCTAACTTTCTTTCAGCGGAAACTCATATCACGATTTCTCCAGAGTCAGAATCAGAGGATGCACATAACGTGGCAGCTCAAACAGAAAATCTAAAGAGGGACGGCTATCCGATGAATGCACCCATTCCCCAGAGCCTGGAAAAATAA___GAACAGGGCATTAACGCAATCATACTCCTATAGTTGATGGCTGGAAGGTTAAATTGAATTACCCTGGAAACTTGTCCAGTATTAAGATGCATCTAGACATTGACTTGTCCTGTAGCTTTCTGCAGTGCCCATTGTTACAGTTTACACTTCAGGAACAACATTTCGAGCTTTACAGATCATCCATCCGTCTTTTATGTTACTCCACGGACTGTAAAAGTAAGAACTGTGAGATAAGCGCAGTCAACAGTTCCTCACTGATGTATATTTGCCTGAAAATACGCAGAATATGAGATTCTGATTTTTAACTGTGTTGATGCAATTCAATTTTGCTTTCTCATTTAAATTATCTGACTGAATCCTGTGTAGCGAGTTAGTAATATATTTTGGGACAAATTGCAATTT

Fln Alignment:

sp_v1.1_unigene31790___WNMDRLGFGNMYVHIVTFILLCMAPYWIFTLAAVNIGNENIREGLGITGIILCVFGLLYGGFWRIQMRKRFGLPGNGCCCGQPNVTDLMQWLFCGVCSLCQEVRTGNFYEVGEDKLYSKEYLGQDSQDLRDASPSLAPLGHEPGSPALNSPSWVKSDLSRNLNAQASVAPVLSPMHYSIENSLPPQGMP-LVREGSTFPSSNFL
B9T6C2_______________WNMERLGFGNMYVHIATFLLLCIAPFWIFNLAAINIDNETVRGALGLTGVVLCLLGLLYGGFWRIQMRKRFNLPANNACCGKPAMADCTQWLFCCWCSLAQEVRTADFYDIVEKKFCRKE------ADVNN-QPALSPLPHDGVIQFRYNPTSSNMNSSRLSKVGADYSP--SPTRFSEDNYTPGKELPKLENEFSTKDADNFM

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
525	75		25		0.996473
974	25		75		0.996473
977	25	75			0.996474
987	60	40			1.0
990	60		40		1.0
1014	60		40		1.0
1024	40			60	1.0
1026	40	60			1.0
1028			40	60	1.0
1042		60		40	1.0
1081	50		25		0.995533
1087	50		50		1.0
1118	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain