SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31757

Length: 1196 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31757

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase 40 n=2 Tax=Arabidopsis RepID=BGL40_ARATH	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	glycosyl hydrolase family 1 expressed	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	81%
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 1	IPR001360	-	81%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	81%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT85

Fln msg: your sequence is shorter than subject: 289 - 508

Fln protein: RRDLGCHSNSATEPYIVAHNVLLSHAKTVDIYRTNYKAKQGGRIGVALDVIWYEPMSDSPEDIAATQRAQDFQLGWFMDPLVFGDYPASMRERVGNRLPLFSSEESNRVKGSLDFVGINHYTTYYARNNKTDLTSVLLNDTLSDSGVVTLPFKNGKAIGDKAASSWLYIVPHGIRSLMNYIKQRYNNPPVIITENGMDDSNNILIPLKEALNDQKRIKYHADYLSNLSAAIKEDGCNVGGYFAWSLLDNWEWAAGYTSRFGLYFVDYRHNLTRHAKASVQWFKCFLTP*

Protein Length: 290

Fln nts: CGTCGTGACCTTGGCTGTCACTCGAATTCCGCTACCGAACCCTATATCGTTGCTCACAATGTGCTTCTTTCTCATGCCAAAACTGTGGACATATACAGGACAAACTATAAGGCAAAGCAAGGCGGAAGAATTGGTGTGGCTTTGGATGTGATCTGGTACGAGCCAATGTCAGATTCCCCTGAAGATATTGCAGCTACACAGAGAGCCCAAGATTTCCAGTTGGGATGGTTCATGGATCCGCTGGTTTTCGGAGACTATCCGGCGTCGATGAGAGAAAGAGTGGGCAACCGACTGCCGTTATTCTCATCAGAAGAGTCGAATCGCGTGAAAGGGTCGCTGGATTTCGTGGGCATTAACCATTATACCACATATTACGCGAGGAACAACAAGACCGACCTCACCTCAGTTCTTCTGAACGATACGCTCTCGGACTCCGGCGTTGTTACCCTCCCCTTCAAGAATGGAAAAGCCATTGGTGACAAGGCAGCCTCATCATGGCTTTACATAGTGCCTCACGGAATCCGGAGTCTAATGAATTACATAAAACAACGTTACAACAACCCTCCGGTCATTATCACGGAGAACGGGATGGACGACAGCAACAATATTTTGATTCCCCTGAAAGAGGCATTGAACGATCAGAAACGGATAAAATATCACGCAGATTATCTCTCCAATCTTTCTGCTGCAATCAAGGAAGATGGCTGTAACGTTGGTGGGTATTTCGCGTGGTCTCTGTTGGACAATTGGGAATGGGCAGCGGGGTACACATCCAGATTTGGGCTCTATTTTGTTGACTACAGACACAACCTCACCAGACATGCCAAAGCTTCTGTCCAATGGTTCAAATGTTTTCTCACTCCATAG___ATACATCATGTGTCTGTTATTAAACGTTTTCCTTCCTTCATTGCCAGATTGGCGTGAACATTCAAAAATAGCCAATACATACGTTTGGCTATCACATTTGTTTAAGCGATAAATGCAACCTCACGGGCATATTTGAGTTTTAGCTTCTCACAGAATCCCGTTGGTGGGCATATTTGAGTTTTAACTTCTCACAAAATCCCGTTGGTGAAGCAATGACCAATAAACTGTTTATTAATTGTGAATGGCATTCCATTTCCTTAGCTCTGCTACTTTAGGGAATTGATTGGACTTCATGAAAATATACTTTTACaGGATAGTTGGCATAGACC

Fln Alignment:

sp_v1.1_unigene31757___NSATEPYIVAHNVLLSHAKTVDIYRTNYKAKQGGRIGVALDVIWYEPMSDSPEDIAATQRAQDFQLGWFMDPLVFGDYPASMRERVGNRLPLFSSEESNRVKGSLDFVGINHYTTYYARNNKTDLTSVLLNDTLSDSGVVTLPFKNGKAIGDKAASSWLYIVPHGIRSLMNYIKQRYNNPPVIITENGMDDSNNILIPLKEALNDQKRIKYHADYLSNLSAAIKEDGCNVGGYFAWSLLDNWEWAAGYTSRFGLYFVDYRHNLTRHAKASVQWFKCFL
C0PT85_______________DSSTEPYLVAHNQLLAHAVAVDIYRKKFQDKQGGVIGITVDGEGSEPFTDAEGDKEAAQRRLEFQFGWFLDPLYFGDYPAIMRKKVGDRLPQFSPDEVALLLGSVDFVGLNHYTTRYVIPSFQSSE----DEFFVDQDIHRIAEWEGNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALNDTKRVNYFKGYLKSLAKAIRE-GVDVRGYFAWSLIDNFEWSQGYTKRFGLVFVDYKNELKRHPKSSAHWFTSFL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
918		88		11	0.991528
920		11		88	0.923564
948		11		88	0.923564
992	88		11		0.923564
998	11	88			0.923564
1001	11	88			0.923564
1022	12		87		0.992554
1032	50		50		1.0
1096	33	66			0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain