SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31745

Length: 474 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene31745
ATGGGGAGATGGTTATCCGCCTTGAAATCCCAGATCTGCTATTTCTCTGGCCCAACAGTCTGTAACTTTGTGCAGCCTTTTCTCCCTATTTTCGGTTGTGTGTTCGATTCATAGGTTTTAGCTGAGTATTTATAACTTTGTTTTCATGGCATCTCTGAAATTCAAGGTCACCCGAAAGCCGGCGGTCCTCGTCGCTCCTTCCCTCCCTACTCCGAGAGAAATTCTATACCTTTCTAATATTGATGATCAAGCGACTCTGAGATTTCATAGTACCGGCGTTCAGTTCTATCGGTTCGACCCGTCTAGGAAGGGCGAGGATCCCGCCAGAGTTATCCGTGAAGGGCTGGCGAAGGTTTTGGTGTGGTACTATCCTTACACTGGAAGGCTGATAGATGCGGCCGACGGTAAGCTCGTGGTAGAGTGCACGGGTGAAGGGGTTTTGTTTGTGGAAGCTGATGCGGACGTTTCTCTCGA

Ace file of the UniGene sp_v1.1_unigene31745

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transferase, putative n=1 Tax=Ricinus communis RepID=B9SDF2_RICCO	-	-	1.0e-31	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	protein	-	-	9.3887e-44	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transferase	IPR003480	-	9.3887e-44	75%
Blast2go	Chloramphenicol acetyltransferase-like domain	IPR023213	-	9.3887e-44	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLR5

Fln msg: Distance to subject end: 338 aas, your sequence is shorter than subject: 109 - 448

Fln protein: MASLKFKVTRKPAVLVAPSLPTPREILYLSNIDDQATLRFHSTGVQFYRFDPSRKGEDPARVIREGLAKVLVWYYPYTGRLIDAADGKLVVECTGEGVLFVEADADVSL

Protein Length: 110

Fln nts: ATGGGGAGATGGTTATCCGCCTTGAAATCCCAGATCTGCTATTTCTCTGGCCCAACAGTCTGTAACTTTGTGCAGCCTTTTCTCCCTATTTTCGGTTGTGTGTTCGATTCATAGGTTTTAGCTGAGTATTTATAACTTTGTTTTC_-_ATGGCATCTCTGAAATTCAAGGTCACCCGAAAGCCGGCGGTCCTCGTCGCTCCTTCCCTCCCTACTCCGAGAGAAATTCTATACCTTTCTAATATTGATGATCAAGCGACTCTGAGATTTCATAGTACCGGCGTTCAGTTCTATCGGTTCGACCCGTCTAGGAAGGGCGAGGATCCCGCCAGAGTTATCCGTGAAGGGCTGGCGAAGGTTTTGGTGTGGTACTATCCTTACACTGGAAGGCTGATAGATGCGGCCGACGGTAAGCTCGTGGTAGAGTGCACGGGTGAAGGGGTTTTGTTTGTGGAAGCTGATGCGGACGTTTCTCTCGA

Fln Alignment:

sp_v1.1_unigene31745___MASLKFKVTRKPAVLVAPSLPTPREILYLSNIDDQATLRFHSTGVQFYRFDPSRKGEDPARVIREGLAKVLVWYYPYTGRLIDAADGKLVVECTGEGVLFVEADADVSL
B8LLR5_______________MATLQFKVTRKPAVLVAPSRPTPKEFLYLSNIDDQAGLRFHIPVVQFYQFDPSKKGEDPARVIREGLAKALVFYYPFAGRLRDAPAGKLVVDCTGEGVLFVEADADVAL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
84		66		33	0.997476
101	33	33		33	0.997753
116			33	66	0.997476
144		33		66	0.997476
178	33		66		0.997459
181	33		66		0.997454
187	50	50			1.0
223		33		66	0.997452
229		75		25	0.99649
235		50		50	1.0
251			66	33	0.997452
252		75	25		0.996486
259		33	66		0.997452
264			20	80	0.995499
265			20	80	0.995499
266		80	20		0.995497
278	40		40	20	1.0
310	40		60		1.0
316			60	40	1.0
346	50		50		1.0
376		66		33	0.997464
377	66		33		0.997454
378		66		33	0.997453
379		33		66	0.997454
386		66	33		0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain