SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31727

Length: 215 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene31727
CCCCAGGCACACAGCCTGGGGATGTGATTGTGCTTTCAAAGTTAGGAGTACCCAAGCTAAACAAGCCATCTGTTCGTGGGGATCATCTGTTCACTGTGAAAGTGATCATACCTACTCGGATCAGTGGAAGAGAACGGGCATTGATTGAAGAACTTGCAAGCCTTCAAAATATCAGGGATGGTCGTGCCAGTGTTCGTTCTGCACGCAGGCCTCAG

Ace file of the UniGene sp_v1.1_unigene31727

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNAJ heat shock protein, putative	-	-	7.0e-18	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	dnaj heat shock	-	-	8.40217e-29	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	8.40217e-29	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chaperone DnaJ, C-terminal	IPR002939	-	8.40217e-29	82%
Blast2go	HSP40/DnaJ peptide-binding	IPR008971	-	8.40217e-29	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9P9

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 71 - 508

Fln protein: PGTQPGDVIVLSKLGVPKLNKPSVRGDHLFTVKVIIPTRISGRERALIEELASLQNIRDGRASVRSARRPQ

Protein Length: 72

Fln nts: CCCCAGGCACACAGCCTGGGGATGTGATTGTGCTTTCAAAGTTAGGAGTACCCAAGCTAAACAAGCCATCTGTTCGTGGGGATCATCTGTTCACTGTGAAAGTGATCATACCTACTCGGATCAGTGGAAGAGAACGGGCATTGATTGAAGAACTTGCAAGCCTTCAAAATATCAGGGATGGTCGTGCCAGTGTTCGTTCTGCACGCAGGCCTCAG

Fln Alignment:

sp_v1.1_unigene31727___PGTQPGDVIVLSKLGVPKLNKPSVRGDHLFTVKVIIPTRISGRERALIEELASLQNIRDGRASVRSARRPQ
D5A9P9_______________PGTQPGDVIVLSKLGVPKLNKPSVRGDHLFTVKVTIPTRISERERALIEELARLQNVRDDRASVRSARRPQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
92		80	20		0.995493
95		20		80	0.995493
96			80	20	0.995493
99	80		20		0.995493
100	80	20			0.995493
101	80			20	0.995493
104		20	80		0.995493
122		40		60	1.0
138		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain