SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31726

Length: 531 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene31726
GACAGCAGGATGTGGTTTCTTCAAGGCGGTGATAACTGGGAAGGGAGGACATGCAGCGAGTCCAGAACATGCAGTTGATCCTATTGTAGCAGCTTCTGCTTCTATTGTCAGCCTACAGCAGCTTATTTCCCGGGAAACTAACCCTTTGGAATCACAGGTGGTAACAGTGACTACGGCTAATGGAGGTGGTGCATATAATGTGATTCCAGACTCGGTTACTATAAGTGGCACATTTCGTGCTTATTCAAATGAGAGCTTTTATAGATCTAAACAAAGAATAGAGGAGATTATTGTAGGCCAATCTCTTGTTCAGAGGTGCGCTGCAACTGTGGAATTCTTAGAAAAGGAGTACCCATTTATTCCTCCAACTGTCAATGACCAGAATATGCATGATCATGTTTGGAAAGTTGCAGCTGATCTAGTTGGTGCACATAATCTGAAACTTGCAACTCCTCATATGGCTACAGAAGACTTTGCTTTTTATGCCGAGGCTATACCTGGTGCCTTTTTCATAGGAATGAAAAATGAGAC

Ace file of the UniGene sp_v1.1_unigene31726 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Iaa-amino acid hydrolase 11 n=3 Tax=Populus RepID=B9GVN2_POPTR	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	iaa-amino acid hydrolase	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase M20, dimerisation	IPR011650	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQG8

Fln msg: Distance to subject end: 53 aas, your sequence is shorter than subject: 176 - 487

Fln protein: TAGCGFFKAVITGKGGHAASPEHAVDPIVAASASIVSLQQLISRETNPLESQVVTVTTANGGGAYNVIPDSVTISGTFRAYSNESFYRSKQRIEEIIVGQSLVQRCAATVEFLEKEYPFIPPTVNDQNMHDHVWKVAADLVGAHNLKLATPHMATEDFAFYAEAIPGAFFIGMKNE

Protein Length: 177

Fln nts: GACAGCAGGATGTGGTTTCTTCAAGGCGGTGATAACTGGGAAGGGAGGACATGCAGCGAGTCCAGAACATGCAGTTGATCCTATTGTAGCAGCTTCTGCTTCTATTGTCAGCCTACAGCAGCTTATTTCCCGGGAAACTAACCCTTTGGAATCACAGGTGGTAACAGTGACTACGGCTAATGGAGGTGGTGCATATAATGTGATTCCAGACTCGGTTACTATAAGTGGCACATTTCGTGCTTATTCAAATGAGAGCTTTTATAGATCTAAACAAAGAATAGAGGAGATTATTGTAGGCCAATCTCTTGTTCAGAGGTGCGCTGCAACTGTGGAATTCTTAGAAAAGGAGTACCCATTTATTCCTCCAACTGTCAATGACCAGAATATGCATGATCATGTTTGGAAAGTTGCAGCTGATCTAGTTGGTGCACATAATCTGAAACTTGCAACTCCTCATATGGCTACAGAAGACTTTGCTTTTTATGCCGAGGCTATACCTGGTGCCTTTTTCATAGGAATGAAAAATGAGAC

Fln Alignment:

sp_v1.1_unigene31726___TAGCGFFKAVITGKGGHAASPEHAVDPIVAASASIVSLQQLISRETNPLESQVVTVTTANGGGAYNVIPDSVTISGTFRAYSNESFYRSKQRIEEIIVGQSLVQRCAATVEFLEKEYPFIPPTVNDQNMHDHVWKVAADLVGAHNLKLATPHMATEDFAFYAEAIPGAFFI-GMKNE
B8LQG8_______________TAGCGFFKAVITGKGGHAALPELAIDPIIAASASIVSLQHLVSRETNPLDSQVVTVTTSSGGDAFNVIPDSVTISGTFRAFSNESFYRLKQRIEEIIVGQSLVQRCAATVEFLEKEYPFIPPTVNNQIMHDHVCKVAADLVGSHNLKIATPLMAGEDFAFYTEVIPADFFLFGMKNE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
345		66	33		0.997452
460		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain