SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31713

Length: 482 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene31713
CGTCGTGACCTTGGCTGTCACTCAATATGTCCATCCACTGGACTCCCTTTTTCTAACGCAATCCCACATATGAAAAAGGAAAGGGACGATTCCACTGAAAGAAGCAGATTCACAACATAAGAAAAGTGGAATGTAGTGTAGTTATACAGAGAGGAGAGTACCAGGTTGTTGGTGATCTTTCTATTTTTCTTCTGATATTGGTATTGGCAGAGTGAGTGAACGAATGGCTAATCTAAAGGCTCTAAAGAATAACGCAGCAGCTGCAATTTCTGCAAAGAAGCCAATGTGGCTGTATCCCAAGATACTTGCAGGTTTCAATCCTTCTGAGAGATGGGGTCACTCCACTTGTTACTCAGATGGCCATCTCTATGTCTTCGGGGGTTGCTGTGGAGGATTGCATTTCAGTGACGTTCTGACACTTGATTTGAGAACGATGGTGTGGAGCGCACTTGCAACAACTGGGCATCAGCCAGGTACGAGAG

Ace file of the UniGene sp_v1.1_unigene31713 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kelch motif family protein	-	-	5.0e-23	69%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	0.0	75%
Blast2go	kelch motif family protein	-	-	1.1349e-25	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kelch repeat type 1	IPR006652	-	1.1349e-25	81%
Blast2go	Kelch-type beta propeller	IPR015915	-	1.1349e-25	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: C4IZJ4

Fln msg: Distance to subject end: 553 aas, your sequence is shorter than subject: 86 - 625

Fln protein: MANLKALKNNAAAAISAKKPMWLYPKILAGFNPSERWGHSTCYSDGHLYVFGGCCGGLHFSDVLTLDLRTMVWSALATTGHQPGTR

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATGTCCATCCACTGGACTCCCTTTTTCTAACGCAATCCCACATATGAAAAAGGAAAGGGACGATTCCACTGAAAGAAGCAGATTCACAACATAAGAAAAGTGGAATGTAGTGTAGTTATACAGAGAGGAGAGTACCAGGTTGTTGGTGATCTTTCTATTTTTCTTCTGATATTGGTATTGGCAGAGTGAGTGAACGA_-_ATGGCTAATCTAAAGGCTCTAAAGAATAACGCAGCAGCTGCAATTTCTGCAAAGAAGCCAATGTGGCTGTATCCCAAGATACTTGCAGGTTTCAATCCTTCTGAGAGATGGGGTCACTCCACTTGTTACTCAGATGGCCATCTCTATGTCTTCGGGGGTTGCTGTGGAGGATTGCATTTCAGTGACGTTCTGACACTTGATTTGAGAACGATGGTGTGGAGCGCACTTGCAACAACTGGGCATCAGCCAGGTACGAGAG

Fln Alignment:

sp_v1.1_unigene31713___MWLYPKILAGFNPSERWGHSTCYSDGHLYVFGGCCGGLHFSDVLTLDLRTMVWSALATTGHQPGTR
C4IZJ4_______________MWLYPKVV-GFNPPERWGHSACFFEGVVYVFGGCCGGLHFSDVVTLDVETMAWSALATTGQRPGTR

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
80		25	75		0.996473
82	75			25	0.996473
83	75	25			0.996473
85			75	25	0.996473
89	25			75	0.996473
90	25	75			0.996473
93	25	75			0.996473
94		75		25	0.996473
95	75		25		0.996473
98	25		75		0.996473
99	33	66			0.997452
104		75	25		0.996477
315	75	25			0.996473
316	75	25			0.996473
318	75	25			0.996473
320		75		25	0.996476
338		33	66		0.997454
339		33		66	0.997454
340	66	33			0.997454
341		33		66	0.997454
343	66			33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain