SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31644

Length: 1955 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene31644
CTTACATTTAGTGATAAAGCTGTCACGCTCTTTCTTCCCTCAGTTCTGTACATATAGTTTGCATGGACTGGAGAAAAATATGTGTATAATTGAGGAGAGTAGTCTAATTTCCTGTTGCACTGCCATTGATAATCCATTGGAGAGAAAGTATCATGGGCCACCCGGATTCGTGTACGAAGCAGATTAGAAATACGAATTCGAGCCAGCTTAGAAATAACAGGATTGTTTCTCTTTTTGCAGCTGCGAGCGCAATTTCGGTTCTTATTTATTTGTTCTCTCAACTGTTTACTGGTGAAGAAACCATGGAGAATACGTGGCTAAAGAGAAACTCCAGCTTCTTTCCAAGGCCCAAGGTTGTTGACTGTTCTGCTCCTCCTGTTTCTCCCTTACAAAATGCTTCTGAAACTGTAAATTATGGAGGTACAAAGATTATTTCTTCAGACATCCGACATGGCTATAATTCTAGTGCAGTGCTAGAAACTGGTAACAGTTTAGACCAGAATGATGGAGGTGGTAATTCGGTCTCTGAGAAGAATGATGGAGATGGTAATTCGGTCTCTGAGAAGGCACAATTATTGGCTAAAGAGAGGAATCCTGAAAAATCCCAACCGGTAAATCAATCTGTAAACATATCTGAATTTGGTTTAGAGCAGGAAATTGATAAGAAGGCAAATGTCGATATAGTGAGTGAGAAAGAACAAACACTGGCCAAATGTGATATATATTCCGGGAAATGGGTTCATGATGATTCGTATCCTCTTTATCCTGCGGGAGAATGCCCTTATATGAGCGCCTCCTTTAACTGCAAAGGCAATGGGCGAACAGATTCAGGCTATACAAATTGGAGATGGCAACCCAGAGAGTGTAATCTTCCCAGGTTGAACGCTACGGACCTGCTGGAGAGGCTGAGAGGAAAGAGGCTCATGTTCGTCGGAGACTCCATCAGTCGTAACCAGTGGGAATCCCTGCTTTGCGTTTTGAAAACTGTAGTGCCTGAAAACAGAAAGACCTTTGGAACGAAAGGTGCATCAACTGCATTCGTAGCTCAGGATTATAACTGTAGCGTGGAGTTCTATTGGGCAGCCTTCTTAGTTGAGCTAGGGAGCATTAACATTGGGAATAAAAGCAAAGAAATACTAAAGCTCGATGCAATTGAGAAACATGGGTCTTTCTGGAAAGATGTTGATATCCTCATCTTCAATACAGGACATTGGTGGGGACATGGGGATGAATCTGCAACAAGAAACTACTATCAAGAAGGGAACTACCTTCACCCACAGTTGGATACGCTGGTTGCCTTTGAAAAAGGGCTTAGAACTTGGGCAAAATGGGTAGATCACAATATCAATCCTACAAAAACCAATGTGTTCTTTCGTGGATTTTCTCCGATGCATTTCAGTGCACAGCAGTGGAACAAGTCGGACCAGTTTAAATGTAGATATCAGACGGAGCCAATCTTTGAGGAGTCGTTCGTGAGACCTCATCCTGTAATGCTGCAAATTGTGGAGAATGTGCTCGGCGATATGAAATTCCCTGTCTCGCTACTGAACATAACGACGATGTCAGATTTTCGGAAGGACGGACATCCATCTGTGTATAAGCAGGACATAAAGGAGGAGGAGCGCAGCAATCCGAACAAGATTGGAGATTGCAGTCACTGGTGTTTACCCGGTTTACCTGATATTTGGAATGAGTTATTGTATGGGAGCTTGGTCTTGGAAGGCGCAACTTCTCCATGATCGCCTGGTGACATTTATGTTTTACCCGCTTCCAATATGCTATTCATCCCATTCCATTTTGCAAAATTGCAAGTAAAATGGGTGTATTCATTCCATTGCATTTTGAAAATTTCGAAGAAAACGATTGTTCCTTTCTTTGGATGCACATCCATGGAATTGATCGCAATCATTAAGTTGTTGTATGATCTTCTGCAATAAGATTTTTGACAAGTTTTC

Ace file of the UniGene sp_v1.1_unigene31644

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lustrin A-like n=4 Tax=Oryza sativa RepID=Q69T67_ORYSJ	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	lustrin a-like	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF231, plant	IPR004253	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSX7

Fln msg: your sequence is longer than subject: 529 - 437

Fln protein: MGHPDSCTKQIRNTNSSQLRNNRIVSLFAAASAISVLIYLFSQLFTGEETMENTWLKRNSSFFPRPKVVDCSAPPVSPLQNASETVNYGGTKIISSDIRHGYNSSAVLETGNSLDQNDGGGNSVSEKNDGDGNSVSEKAQLLAKERNPEKSQPVNQSVNISEFGLEQEIDKKANVDIVSEKEQTLAKCDIYSGKWVHDDSYPLYPAGECPYMSASFNCKGNGRTDSGYTNWRWQPRECNLPRLNATDLLERLRGKRLMFVGDSISRNQWESLLCVLKTVVPENRKTFGTKGASTAFVAQDYNCSVEFYWAAFLVELGSINIGNKSKEILKLDAIEKHGSFWKDVDILIFNTGHWWGHGDESATRNYYQEGNYLHPQLDTLVAFEKGLRTWAKWVDHNINPTKTNVFFRGFSPMHFSAQQWNKSDQFKCRYQTEPIFEESFVRPHPVMLQIVENVLGDMKFPVSLLNITTMSDFRKDGHPSVYKQDIKEEERSNPNKIGDCSHWCLPGLPDIWNELLYGSLVLEGATSP*

Protein Length: 530

Fln nts: CTTACATTTAGTGATAAAGCTGTCACGCTCTTTCTTCCCTCAGTTCTGTACATATAGTTTGCATGGACTGGAGAAAAATATGTGTATAATTGAGGAGAGTAGTCTAATTTCCTGTTGCACTGCCATTGATAATCCATTGGAGAGAAAGTATC_-_ATGGGCCACCCGGATTCGTGTACGAAGCAGATTAGAAATACGAATTCGAGCCAGCTTAGAAATAACAGGATTGTTTCTCTTTTTGCAGCTGCGAGCGCAATTTCGGTTCTTATTTATTTGTTCTCTCAACTGTTTACTGGTGAAGAAACCATGGAGAATACGTGGCTAAAGAGAAACTCCAGCTTCTTTCCAAGGCCCAAGGTTGTTGACTGTTCTGCTCCTCCTGTTTCTCCCTTACAAAATGCTTCTGAAACTGTAAATTATGGAGGTACAAAGATTATTTCTTCAGACATCCGACATGGCTATAATTCTAGTGCAGTGCTAGAAACTGGTAACAGTTTAGACCAGAATGATGGAGGTGGTAATTCGGTCTCTGAGAAGAATGATGGAGATGGTAATTCGGTCTCTGAGAAGGCACAATTATTGGCTAAAGAGAGGAATCCTGAAAAATCCCAACCGGTAAATCAATCTGTAAACATATCTGAATTTGGTTTAGAGCAGGAAATTGATAAGAAGGCAAATGTCGATATAGTGAGTGAGAAAGAACAAACACTGGCCAAATGTGATATATATTCCGGGAAATGGGTTCATGATGATTCGTATCCTCTTTATCCTGCGGGAGAATGCCCTTATATGAGCGCCTCCTTTAACTGCAAAGGCAATGGGCGAACAGATTCAGGCTATACAAATTGGAGATGGCAACCCAGAGAGTGTAATCTTCCCAGGTTGAACGCTACGGACCTGCTGGAGAGGCTGAGAGGAAAGAGGCTCATGTTCGTCGGAGACTCCATCAGTCGTAACCAGTGGGAATCCCTGCTTTGCGTTTTGAAAACTGTAGTGCCTGAAAACAGAAAGACCTTTGGAACGAAAGGTGCATCAACTGCATTCGTAGCTCAGGATTATAACTGTAGCGTGGAGTTCTATTGGGCAGCCTTCTTAGTTGAGCTAGGGAGCATTAACATTGGGAATAAAAGCAAAGAAATACTAAAGCTCGATGCAATTGAGAAACATGGGTCTTTCTGGAAAGATGTTGATATCCTCATCTTCAATACAGGACATTGGTGGGGACATGGGGATGAATCTGCAACAAGAAACTACTATCAAGAAGGGAACTACCTTCACCCACAGTTGGATACGCTGGTTGCCTTTGAAAAAGGGCTTAGAACTTGGGCAAAATGGGTAGATCACAATATCAATCCTACAAAAACCAATGTGTTCTTTCGTGGATTTTCTCCGATGCATTTCAGTGCACAGCAGTGGAACAAGTCGGACCAGTTTAAATGTAGATATCAGACGGAGCCAATCTTTGAGGAGTCGTTCGTGAGACCTCATCCTGTAATGCTGCAAATTGTGGAGAATGTGCTCGGCGATATGAAATTCCCTGTCTCGCTACTGAACATAACGACGATGTCAGATTTTCGGAAGGACGGACATCCATCTGTGTATAAGCAGGACATAAAGGAGGAGGAGCGCAGCAATCCGAACAAGATTGGAGATTGCAGTCACTGGTGTTTACCCGGTTTACCTGATATTTGGAATGAGTTATTGTATGGGAGCTTGGTCTTGGAAGGCGCAACTTCTCCATGA___TCGCCTGGTGACATTTATGTTTTACCCGCTTCCAATATGCTATTCATCCCATTCCATTTTGCAAAATTGCAAGTAAAATGGGTGTATTCATTCCATTGCATTTTGAAAATTTCGAAGAAAACGATTGTTCCTTTCTTTGGATGCACATCCATGGAATTGATCGCAATCATTAAGTTGTTGTATGATCTTCTGCAATAAGATTTTTGACAAGTTTTC

Fln Alignment:

sp_v1.1_unigene31644___VSEKEQTLAKCDIYSGKWVHDDSYPLYPAGECPYMSASFNCKGNGRTDSGYTNWRWQPRECNLPRLNATDLLERLRGKRLMFVGDSISRNQWESLLCVLKTVVPENRKTFGTKGASTAFVAQDYNCSVEFYWAAFLVELGSINIGNKSKEILKLDAIEKHGSFWKDVDILIFNTGHWWGHGDESATRNYYQEGNYLHPQLDTLVAFEKGLRTWAKWVDHNINPTKTNVFFRGFSPMHFSAQQWNKSDQFKCRYQTEPIFEESFVRPHPVMLQIVENVLGDMKFPVSLLNITTMSDFRKDGHPSVYKQDIKEEERSNPNKIGDCSHWCLPGLPDIWNELLYGSLVLEGAT
C0PSX7_______________VGENKADTTKCNLFSGTWVRDASYPLFLGAQCPYVDSKATCRQNGRPDSDYEKWRWQPSGCSIPSFNARDMLERLRGKRLMFVGDSISQSQWESMVCMLQAVIPSNKKTMISQSSLTIFKALDYSASVEFFWAPFLVQL---RTDSQNKRILYLDSMESNGIYWQGIDVLVFESSHWWQH----QRWDLIMDGNKPDPNMDPMVAYKKALMTWTKWISANIDPKRSLVFFSTTSPKHYDPREWSETNVYHCYNQTGPVQFEGFRPPVPPQVLIVKEVVESMSFPVTLMDITGLSQFRKDGHPSIYSSVLSNEEKKHPEKFGDCSHWCLPGVPDTWNELLYVTLLFMGFT

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
372		66		33	0.997452
423	33		66		0.997452
424		33		66	0.997452
428	66	33			0.997452
465	25	75			0.996473
469		25		75	0.996473
487		20		80	0.995493
538		20		80	0.995493
603	66			33	0.997452
654	75		25		0.996473
684		50		50	1.0
708		50		50	1.0
709	50		50		1.0
763			20	80	0.995493
841	83		16		0.994512
842	60	40			1.0
865			60	40	1.0
868		40		60	1.0
899	33		66		1.0
905	66			33	1.0
906			66	33	1.0
908			57	14	1.0
911			14	57	1.0
915	71	28			1.0
916			71	28	1.0
919	71			28	1.0
920	71		28		1.0
924			71	28	1.0
928	71	28			1.0
930	28		71		1.0
931		28		71	1.0
936	40	60			1.0
979		25	75		0.996473
1107		40	60		1.0
1114	80		20		0.995493
1126	80		20		0.995493
1127	75	25			0.996474
1175	20			80	0.995493
1207	80			20	0.995493
1437	33		66		0.999989
1486	33	66			0.999978
1492	33		66		1.0
1507	33		66		0.997452
1537	50	50			1.0
1541	25		75		0.996476
1576	33			66	0.997452
1578		66	33		0.997452
1595	66		33		0.997452
1773	25		75		0.996473
1915		50		50	1.0
1916		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain