SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31625

Length: 389 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene31625
ATGGGGATTGAGGGCTGGAAACGTCTTTGTTAACAACGACCAAATTTAGAGAGGTCGACCGAGACGGAGCGGGAAGTGGCTGTCGATCGAATCGCAGCCCAGGGTTTCTTCTCACCATTGCGCAGATCCGCTATTCTCATGCTTCAGGAGGAAATTAAAGACTGAAGATGGTTGAAATGAGGGAGAACGCCACTTATCAAGCGGAGCTTCATAACTATGAAGGGGAGGAGGGAACTGCCCCTGACCATGTTGCTTCGAAGGGTGCCGCTGATACATTCAAGAAAGGGTACAACGACATTGATGGATCAGGATTCAAAGACTTTTTATTGAAACCAGACATGCTTCGGCCTGGGTTAGGGCATCTTTCAGAAGGAAACGAAAAAAGAGAC

Ace file of the UniGene sp_v1.1_unigene31625

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dead box ATP-dependent RNA helicase, putative; K12812 ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]	-	-	3.0e-10	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	hypothetical protein SELMODRAFT_146823 [Selaginella moellendorffii]	-	-	3.80272e-13	67%

Source	ECs	Term	Type	e value	Identity
AutoFact	RNA helicase.	EC:3.6.4.13	-	3.0e-10	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9C0

Fln msg: Distance to subject end: 350 aas, your sequence is shorter than subject: 74 - 427

Fln protein: MVEMRENATYQAELHNYEGEEGTAPDHVASKGAADTFKKGYNDIDGSGFKDFLLKPDMLRPGLGHLSEGNEKRD

Protein Length: 75

Fln nts: ATGGGGATTGAGGGCTGGAAACGTCTTTGTTAACAACGACCAAATTTAGAGAGGTCGACCGAGACGGAGCGGGAAGTGGCTGTCGATCGAATCGCAGCCCAGGGTTTCTTCTCACCATTGCGCAGATCCGCTATTCTCATGCTTCAGGAGGAAATTAAAGACTGAAG_-_ATGGTTGAAATGAGGGAGAACGCCACTTATCAAGCGGAGCTTCATAACTATGAAGGGGAGGAGGGAACTGCCCCTGACCATGTTGCTTCGAAGGGTGCCGCTGATACATTCAAGAAAGGGTACAACGACATTGATGGATCAGGATTCAAAGACTTTTTATTGAAACCAGACATGCTTCGGCCTGGGTTAGGGCATCTTTCAGAAGGAAACGAAAAAAGAGAC

Fln Alignment:

sp_v1.1_unigene31625___MVEMRENATYQAELHNYEGEEGTAPDHVASKGAADTFKKGYNDIDGSGFKDFLLKPDMLR----PGLGHLSE
D5A9C0_______________MGELKESDTYQEELLDYE-EEDVAQESVAARGAGETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
56	25			75	0.996481
57		75		25	0.996481
59	75		25		0.996474
60		75	25		0.996474
61		75	25		0.996474
255	25	75			0.996474
257			25	75	0.996473
258		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain