SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31617

Length: 563 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene31617
CTGACATTTATAGTTATGGGATCGTGGTTCTTGAGATCGTGAGTGGGAGAAAGTGCGTGGATGCAAGACTGCCCGCGCCTCGTCAGCTTCTTCTCGAGTGGGCATGGAATCTGTTCGAGCAGAATAGAGTTTTGGATATTGTGGATCCATTGTTAGAGGGGCAGTACCAAAGAGAGGAAGTGCTAAGAGTGATTACTGTAGCACTTCTATGCACCCAAGGCTCATGGACGCAACGACCGGCAATGTCACAGGTTGTGTCGATATTAACCAACAATTCAGAGAGAATTGTTGAGCCCACACGACCAGCTTTTATAGATGCCGCTGCAGACAGACGCCAGAATTCCACTTCGATACCCGAATCTGCGACCCAAGCTGCTGCTCCAACTCCGACATCTCATGGATCTATCAGCATCTCTTTACTTCCCCGTTAAACGGAACGGTGTTCATCTTTTTACAGTCTGCTACTTCGCTGTTGAAACTAACTTTTGATGCAGGCACAGCAAGAAGGTTTTTAAACAGGACGTTCGAGGTTTGATCCCTCCCATTAATCAAATGCAGTGAAT

Ace file of the UniGene sp_v1.1_unigene31617

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os10g0483400 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group RepID=Q0IWW6_ORYSJ	-	-	1.0e-24	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	leucine rich repeat-like protein	-	-	6.48801e-43	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase-like domain	IPR011009	-	6.48801e-43	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLL8

Fln msg: your sequence is shorter than subject: 143 - 245

Fln protein: DIYSYGIVVLEIVSGRKCVDARLPAPRQLLLEWAWNLFEQNRVLDIVDPLLEGQYQREEVLRVITVALLCTQGSWTQRPAMSQVVSILTNNSERIVEPTRPAFIDAAADRRQNSTSIPESATQAAAPTPTSHGSISISLLPR*

Protein Length: 144

Fln nts: CTGACATTTATAGTTATGGGATCGTGGTTCTTGAGATCGTGAGTGGGAGAAAGTGCGTGGATGCAAGACTGCCCGCGCCTCGTCAGCTTCTTCTCGAGTGGGCATGGAATCTGTTCGAGCAGAATAGAGTTTTGGATATTGTGGATCCATTGTTAGAGGGGCAGTACCAAAGAGAGGAAGTGCTAAGAGTGATTACTGTAGCACTTCTATGCACCCAAGGCTCATGGACGCAACGACCGGCAATGTCACAGGTTGTGTCGATATTAACCAACAATTCAGAGAGAATTGTTGAGCCCACACGACCAGCTTTTATAGATGCCGCTGCAGACAGACGCCAGAATTCCACTTCGATACCCGAATCTGCGACCCAAGCTGCTGCTCCAACTCCGACATCTCATGGATCTATCAGCATCTCTTTACTTCCCCGTTAA___ACGGAACGGTGTTCATCTTTTTACAGTCTGCTACTTCGCTGTTGAAACTAACTTTTGATGCAGGCACAGCAAGAAGGTTTTTAAACAGGACGTTCGAGGTTTGATCCCTCCCATTAATCAAATGCAGTGAAT

Fln Alignment:

sp_v1.1_unigene31617___DIYSYGIVVLEIVSGRKCVDARLPAPRQLLLEWAWNLFEQNRVLDIVDPLLEGQYQREEVLRVITVALLCTQGSWTQRPAMSQVVSILTNNSERIVEPTRPAFIDAAADRRQNSTSIPESXXXXXXXXXXSHGSISISLLPR
B8LLL8_______________DVYSYGIVVLEIVSGRKSVNARLDASMQLLLEWAWNQFQQDQVLDIVDSSLEGQYPREQVLRVIRIALLCTQGSWALRPAMSEVVSMLTNNSEITVQPTQPAFIDDSAGKPTDFTTPSDS---VNLRSASSHGSITVSFVPR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
211	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain