SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31602

Length: 1144 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene31602 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AIG1; AIG1 (AVRRPT2-INDUCED GENE 1); GTP binding	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	avirulence-responsive avirulence induced gene aig	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to bacterium	GO:0009617	Biological Process	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQH0

Fln msg:

Fln protein: MEGSGRPTSGVTNVVLVGKTGNGKSATGNSILGRRAFKSLSRSAPVTGTCQLEQGTTNDGRKLNVIDTPGLFDPNVTLQFLGQEIVKCIDLAKEGLHGVLLVLSIKNRFSTEEASTLETLQTLFGEKIINYMVVVFTGGDELDENEQTLEDYLRDSSPILQRLLLKCNGRKVLFDNRTKSEIVKTKQITELLKQIDVVSFQNEGHPYTNEMFLEAQEWSNRRKNIESGGYSKKEVEILLQTMEKQHAEQLKKSAEAVEETLRKSTKTFEEQLAAEQSARKKAEEDSRVAMSKIEGQLQSQPPRRRPGVSISVTLPDCVIM*

Protein Length: 322

Fln nts: ATGGGGGATGGGGATTATATCTTTTTGACATTCACTGGTGGTGTCATTGGTTGCTGAAGAACCAATATCCAGGCCATTGGAAAGATAGA_-_ATGGAAGGAAGCGGAAGACCTACGAGTGGGGTGACGAATGTAGTATTGGTAGGGAAAACGGGCAATGGTAAAAGTGCAACTGGTAATTCCATCCTTGGCCGCAGAGCCTTTAAGTCTCTTTCCAGATCTGCCCCGGTTACAGGCACTTGCCAATTAGAACAAGGCACGACGAATGATGGCAGAAAATTGAATGTCATCGACACGCCGGGCCTTTTTGACCCCAACGTCACGCTACAGTTTCTCGGCCAAGAAATTGTCAAATGTATTGACCTCGCAAAGGAAGGACTCCATGGAGTTCTTTTGGTACTTTCCATTAAAAATCGATTTTCTACAGAAGAAGCGAGCACTTTAGAGACCTTGCAAACGTTGTTTGGTGAGAAAATTATCAATTACATGGTGGTTGTCTTTACTGGTGGTGATGAGTTGGATGAAAATGAACAGACATTGGAAGACTACTTGCGTGACAGCTCACCTATACTTCAGAGGCTTTTGCTCAAGTGCAATGGTAGAAAGGTTCTTTTCGATAATAGAACCAAATCAGAAATAGTGAAGACAAAGCAAATAACTGAATTGCTCAAGCAGATAGACGTTGTAAGTTTTCAAAATGAAGGCCATCCTTATACCAACGAGATGTTCCTTGAAGCTCAGGAATGGTCAAACAGGCGTAAGAATATAGAATCGGGTGGATATTCGAAGAAAGAAGTAGAGATTTTACTCCAAACTATGGAAAAACAACACGCTGAACAGCTTAAAAAATCAGCAGAAGCGGTTGAGGAGACATTGCGTAAATCTACAAAAACGTTTGAAGAGCAGTTGGCAGCGGAACAGTCTGCCCGAAAGAAGGCTGAGGAAGATTCACGTGTAGCAATGTCTAAGATTGAAGGGCAATTGCAATCCCAGCCTCCTCGTCGCCGTCCAGGCGTCAGCATTTCTGTTACTCTTCCTGATTGCGTGATTATGTAA___CTCTGAATAATTTTGTTCTAAAACTTAGAACAACATACATTATCTTAAGGATTCTGATGTCATATGGATACCTATTTTGAATACGTATCATT

Fln Alignment:

sp_v1.1_unigene31602___MEGSGRPTSGVTNVVLVGKTGNGKSATGNSILGRRAFKSLSRSAPVTGTCQLEQGTTNDGRKLNVIDTPGLFDPNVTLQFLGQEIVKCIDLAKEGLHGVLLVLSIKNRFSTEEASTLETLQTLFGEKIINYMVVVFTGGDELDENEQTLEDYLRDSSPILQRLLLKCNGRKVLFDNRTKSEIVKTKQITELLKQIDVVSFQNEGHPYTNEMFLEAQEWSNRRKNIESGGYSKKEVEILLQTMEKQHAEQLKKSAEAVEETLRKSTKTFEEQLAAEQSARKKAEEDSRVAMSKIEGQLQ
B8LQH0_______________MEGRGRPTT----LVLLGRTGNGKSATGNSILGRRAFRSSNSSSAVTATCQLEQVQLKDGRKLNVIDTPGLFDPTVNTDFLSKEIVKCIDLAKDGLHGVLLVLSVKNRFTTEETATLQTLQTLFGEKILNYIVVAFTGGDELEETEQTLEEYLRQSSPALQNLVRQCNDRKVLFDNRTKSPTVKEKQRSELLKQVDIVIAQNGGRPFTNELFREAQERSRKHKDIDSGGYSNEQMQILMEKMEKAHAEQLKKSTEMVEEKLRIAINTFEDRLAAEHSARLQVEKDCRENISTFEDKLR

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
230	83	16			0.994512
238	16		83		0.994512
259	14		85		0.993533
263			14	85	0.993533
265			85	14	0.993533
273	66		33		1.0
286			33	66	1.0
379	16		83		0.994512
384		14	14	71	0.984337
421	83	16			0.994512
472		16		83	0.994512
474		16		83	0.994512
505			75	25	0.996473
539	75		25		0.996476
578		33	66		0.997452
697		33		66	0.997454
705	33	66			0.997452
824			75	25	0.996473
828		75		25	0.996473
864	33		66		1.0
874		33		66	1.0
954	33		66		1.0
1022		75	25		0.996473
1051	33		66		1.0
1098	83	16			0.994512
1099		16	83		0.994512
1102	83			16	0.994512
1128	75		25		0.996481
1137	75	25			0.996475
1138		25		75	0.996475
1139	75	25			0.996475
1143		66	33		0.997456
1144		66	33		0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain