SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31595

Length: 401 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene31595
AACGTGGGAGAAAGCCTGCAAATGGCCGCGAAGAACCTCTGAATCATGTTGAGGCTGAGCGGCAAAGGCGTGAGAAATTGAACCAGAAATTTTATGAGCTTCGTGCCGTGGTTCCTAATGTATCGAAAATGGACAAAGCTTCTCTGCTCGGCGATGCTGCTGCTTATATCAAAGATCTCTGTTCCAAACAGCAGGATTTAGAGTCCGAGAGGGTTGAATTGCAGGTTCAAATTGACACTATAAAGAAGGAATTATTGATGAATTCTTTGAAGTTGGCAGCTAAAGAAGCAACAGATCTTTCAAGCATTGACCTTAAAGGTTTTAGCCAGGGGAAATTCCCCGGCTTCAATTCAGAAGTTCGCATTGTTGGCCGAGAGGCGATAATAAGAATTCAGTGTACT

Ace file of the UniGene sp_v1.1_unigene31595

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phaseolin G-box binding protein PG2 [Phaseolus vulgaris]	-	-	1.0e-34	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	myc2	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding domain	IPR001092	-	0.0	75%
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLU3

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 133 - 582

Fln protein: RGRKPANGREEPLNHVEAERQRREKLNQKFYELRAVVPNVSKMDKASLLGDAAAYIKDLCSKQQDLESERVELQVQIDTIKKELLMNSLKLAAKEATDLSSIDLKGFSQGKFPGFNSEVRIVGREAIIRIQCT

Protein Length: 134

Fln nts: AACGTGGGAGAAAGCCTGCAAATGGCCGCGAAGAACCTCTGAATCATGTTGAGGCTGAGCGGCAAAGGCGTGAGAAATTGAACCAGAAATTTTATGAGCTTCGTGCCGTGGTTCCTAATGTATCGAAAATGGACAAAGCTTCTCTGCTCGGCGATGCTGCTGCTTATATCAAAGATCTCTGTTCCAAACAGCAGGATTTAGAGTCCGAGAGGGTTGAATTGCAGGTTCAAATTGACACTATAAAGAAGGAATTATTGATGAATTCTTTGAAGTTGGCAGCTAAAGAAGCAACAGATCTTTCAAGCATTGACCTTAAAGGTTTTAGCCAGGGGAAATTCCCCGGCTTCAATTCAGAAGTTCGCATTGTTGGCCGAGAGGCGATAATAAGAATTCAGTGTACT

Fln Alignment:

sp_v1.1_unigene31595___RGRKPANGREEPLNHVEAERQRREKLNQKFYELRAVVPNVSKMDKASLLGDAAAYIKDLCSKQQDLESERVELQVQIDTIKKELLMNSLKLAAKEATDLSSIDLKGFSQGKFPGFNSEVRIVGREAIIRIQCT
B8LLU3_______________RGRKPANGREEPLNHVEAERQRREKLNQKFYELRAVVPNVSKMDKASLLGDAAAYIKDLCSKQQDLESERVELQDQIESVKKELLMNSLKLAAKEATDLSSIDLKGFSQGKFPGLNSEVRILGREAIIRIQCT

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
106	33	66			0.997461
107		66		33	0.997461
109			33	66	0.997454
199	33			66	0.997476
201	66			33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain