SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31589

Length: 494 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene31589
TAGGGGTTCTGGCCTGAATCTGAAAGCTTCGACGACACGGGTATGGGGCCTGTTCCTTCTCGATGGAAGGGGATCTGCCAAACTGGCACAAACTTCAGTGCAGCTCACTGCAACAGGAAATTGATAGGAGCCAGATACTTCATCAAGGGATATGAGGCCGCAAATGGGCCTTTGAATATCTCGGGAACTGGTGAATTTCTTTCTCCACGAGATAAAGATGGACATGGTACTCATACTTTGTCTACAGCAGGTGGGAATTTTGTGAGAAAAGCAAGTATAACTGGATATGCAGAAGGGATTGCAAAAGGAGGAGCTCCTCATGCTAAAGTTGTAGCCTACAAAGTTTGTTGGCCTCCCATATCAAATGGAGGAGAATGCTATGATGCAGATATTCTTGCAGCATTCGATGCAGGGGGTACATGATGGAGTTGATGTGTTCTCTGTTTCTATCGGATCTGGCCCTCCTCTCTCCAATTATTTTCAAGATGGACTTA

Ace file of the UniGene sp_v1.1_unigene31589

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	subtilisin-like protease	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	74%
Blast2go	lateral root morphogenesis	GO:0010102	Biological Process	74%
Blast2go	catalytic activity	GO:0003824	Molecular Function	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	0.0	74%
Blast2go	Peptidase S8, subtilisin-related	IPR015500	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPS1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 385 aas, your sequence is shorter than subject: 141 - 690

Fln protein: *GFWPESESFDDTGMGPVPSRWKGICQTGTNFSAAHCNRKLIGARYFIKGYEAANGPLNISGTGEFLSPRDKDGHGTHTLSTAGGNFVRKASITGYAEGIAKGGAPHAKVVAYKVCWPPISNGGECYDADILAAFDAGGT*

Protein Length: 142

Fln nts: TAGGGGTTCTGGCCTGAATCTGAAAGCTTCGACGACACGGGTATGGGGCCTGTTCCTTCTCGATGGAAGGGGATCTGCCAAACTGGCACAAACTTCAGTGCAGCTCACTGCAACAGGAAATTGATAGGAGCCAGATACTTCATCAAGGGATATGAGGCCGCAAATGGGCCTTTGAATATCTCGGGAACTGGTGAATTTCTTTCTCCACGAGATAAAGATGGACATGGTACTCATACTTTGTCTACAGCAGGTGGGAATTTTGTGAGAAAAGCAAGTATAACTGGATATGCAGAAGGGATTGCAAAAGGAGGAGCTCCTCATGCTAAAGTTGTAGCCTACAAAGTTTGTTGGCCTCCCATATCAAATGGAGGAGAATGCTATGATGCAGATATTCTTGCAGCATTCGATGCAGGGGGTACATGATGGAGTTGATGTGTTCTCTGTTTCTATCGGATCTGGCCCTCCTCTCTCCAATTATTTTCAAGATGGACTTA

Fln Alignment:

sp_v1.1_unigene31589___GFWPESESFDDTGMGPVPSRWKGICQTGTNFSAAHCNRKLIGARYFIKGYEAANGPLNISGTGEFLSPRDKDGHGTHTLSTAGGNFVRKASITGYAEGIAKGGAPHAKVVAYKVCWPPISNGGECYDADILAAFD
C0PPS1_______________GVWPESLSFNDRGMGPVPAHWKGACESGTNFTASHCNKKLIGARFLSRGYEAAVGPIN--ETAEFRSPRDQDGHGTHTASTAAGAVVLKADLVGYAKGTARGMATRARIAAYKVCWV-----GGCFSTDILAALD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain