SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31579

Length: 2541 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene31579
CGTCGTGACCTTGGCTGTCACTCAATTTGTTGCAGATGGTTGTTCTCGAGTTGATAAGGAAGGTCTGCAGGTCGAATCCTGCGGAGAAGGGGAAATACATCAAAATCATAATTTCGTTGCTGAATTCGTCTTCGACCGCGGTCATGTACGAGTGCGCGGCAACTCTGGTGAGTCTTTCTTCGGCCCCGACGGCAATCCGGGCTGCGGGGAATACCTATTGCCAGCTGTTGTTATCGCAGAGTGACAACAATGTGAAGCTAATTGTGCTGGATCGGTTACACGAGCTTAAGGTATCGCACAGGGATGTTATGGTGGATATGATCATGGATGTGCTGCGGGCGCTTTCGAGTCCGAATCTGGATATACGGAGGAAAACGTTGGATATAGCCTTGGAATTGATCACTCCCAGGAATATCGATGAGGTTGTCATGACGCTGAAGAAAGAGGTCATGAAAACCCAGAGTGGGGAATCGGAGAAGGATGGAGAATACAGGCAAATGCTAGTGCAGGCGATCCATTCGTGTGCCGTTAAGTTCCCAGAAGTTGCAAGCACTGTTGTTCATCTGCTGATGGAATTTTTAGGGGACAACAATATTGCGTCTGCTATGGATGTTGTTCTCTTCGTGCGTGAGATCATCGAGACTAACCCTAAGCTGAGGGTTTCCATAATTGCAAGGCTTTTGGATACTTTTTATCAGATCCGATCTTCTCGTGTCTGTTCATGTGCGCTTTGGATCATTGGAGAGTACTGTCTCTCTCTGTCCGAAGTAGAAAATGGTATATCGACCATTAATCAATGCCTCGGGGAATTACCATTTTACACAGTGGCCGAGGATGCCGAGGGTTTGGCGACTAATAAATCTCAACCAGTGAACGCCGTTACCGTCTCTTCGAGGAGACCTGCTATTCTTGCCGATGGAACTTATGCTACACAGAGCGCTGCCTCAGAAATTGCCGTTGCGACTGCTGCGATGATTCCTGGATCTGCTACGGCTACCGGAAATCTGAGATCAATCCTTTTAACAGGAGATTTCTTTCTTGGTGCTGTCATTGCCTGTACTTTGACTAAGTTGATTCTTCGTTTGGAAGAGGTGCAACCTTCTGGAGTGGCAGTGAATAAGGCAGCTGCTGAAGCACTGTTGATAATGGTCTCTACGCTGCGCCTTGGTCAATCTTCCGTTCTTCCGCATCCAATTGACGATGACTCCTATGATCGGATTAGTCTCTGCATACGCATTCTAACCTGCCCTGATGATTTCTTCAAGAAAGTATGGTTGCAGTCTTGTCGGGAGAGCTTTATGAATATGCTTGCTGACAAGAAGATCCGAGAAATAGAAGAGAGCAAAGCCAAAGCTCAAGTCTTGCACGCACAGCCTGATGACTTGATTGATTTCCGCCTGTTAAAGAGCAGAAAGGGTATGAGTCAGCTGGAATTAGAAGATGAGGTGGAAGATGATTTGAAGCGTGCTACTGGAGAATTTGTGAAGGATGGGAGCAGTATGAATAAATTGAATCGGATTCTACAACTTACAGGCTTCAGTGATCCGGTATATGCAGAAGCATATGTTACAGTTCATCAATATGATATCGTCCTTGATGTGACAGTAATAAACCGTACGAAGGATACACTGCAGAATCTTTGCTTGGAATTGGCTACCATGGGCGATCTTAAACTGGTAGAACGGCCACAAAATTATACTCTAGCACCAGAATCGACCAAGCAGATAAAAGCTAATATAAAGGTTTCTTCAACCGAAACTGGTGTGATCTTTGGTAACATTGTTTATGAGACAACTAGTGTGCTGGATCGCAATGTAGTTGTTCTGAATGATATACACATAGATATTATGGATTACATCTCTCCAGCAACTTGTCCTGATGTTGCTTTTAGGAACATGTGGGCTGAGTTTGAATGGGAAAACAAGGTGGCTGTTAATACAACAATTCAGGACGAAAAAGAGTTCCTAACCCATATTGTGAGCTCAACTAACATGAAGTGCCTTGCACCTCCGTCTGCATTGGATGGAGATTGTGGATTTCTAGCTGCAAACCTGTATGCCAAGAGCGTCTTTGGTGAAGATGCACTGGTAAATGTTAGTGTTGAGAAACAACCTGATGGCAAGCTGAGTGGTTATATCCGGATAAGAAGCAAAACCCAGGGCATTGCCTTGAGTTTGGGTGATAAAATCACACTCAAACAAAAGGGTTAAGCCTATGTGAAATATATGCTTTCCTGCGTACTTTGCCTGTGTGATGGTACATTGACTGTTGGGACACTTGTGTCTATTGTCTTCTCTTAGCCTGCTGATTATTTTTGATAAATGCCATTTAGGGGTTATTTTTGAATTGTAAGTAGCTTACAGATCTTTTTGTTGTGTTATTCTTTATTAAAATTGAGTTGCTCTCCCATCGAGTGGGTTAAGCAGTGTTGAGGCCCGTTTGTTGCCCTTTTGGTAATATTTATTGTAACCATGAGATACTAAAGAAGGAAATTTTGCTTGGTTGGAACTTGGAATAAGAAGTATGGATTTTCAACTCAAA

Ace file of the UniGene sp_v1.1_unigene31579 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative	-	-	76%
FL-Next	sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	88%

Source	InterPros	Term	Type	Identity
Blast2go	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	88%
Blast2go	Coatomer, beta subunit, C-terminal	IPR011710	-	88%
Blast2go	Armadillo-like helical	IPR011989	-	88%
Blast2go	Armadillo-type fold	IPR016024	-	88%
Blast2go	Coatomer beta subunit	IPR016460	-	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR52

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 736 - 948

Fln protein: S*PWLSLNLLQMVVLELIRKVCRSNPAEKGKYIKIIISLLNSSSTAVMYECAATLVSLSSAPTAIRAAGNTYCQLLLSQSDNNVKLIVLDRLHELKVSHRDVMVDMIMDVLRALSSPNLDIRRKTLDIALELITPRNIDEVVMTLKKEVMKTQSGESEKDGEYRQMLVQAIHSCAVKFPEVASTVVHLLMEFLGDNNIASAMDVVLFVREIIETNPKLRVSIIARLLDTFYQIRSSRVCSCALWIIGEYCLSLSEVENGISTINQCLGELPFYTVAEDAEGLATNKSQPVNAVTVSSRRPAILADGTYATQSAASEIAVATAAMIPGSATATGNLRSILLTGDFFLGAVIACTLTKLILRLEEVQPSGVAVNKAAAEALLIMVSTLRLGQSSVLPHPIDDDSYDRISLCIRILTCPDDFFKKVWLQSCRESFMNMLADKKIREIEESKAKAQVLHAQPDDLIDFRLLKSRKGMSQLELEDEVEDDLKRATGEFVKDGSSMNKLNRILQLTGFSDPVYAEAYVTVHQYDIVLDVTVINRTKDTLQNLCLELATMGDLKLVERPQNYTLAPESTKQIKANIKVSSTETGVIFGNIVYETTSVLDRNVVVLNDIHIDIMDYISPATCPDVAFRNMWAEFEWENKVAVNTTIQDEKEFLTHIVSSTNMKCLAPPSALDGDCGFLAANLYAKSVFGEDALVNVSVEKQPDGKLSGYIRIRSKTQGIALSLGDKITLKQKG*

Protein Length: 737

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGTTGCAGATGGTTGTTCTCGAGTTGATAAGGAAGGTCTGCAGGTCGAATCCTGCGGAGAAGGGGAAATACATCAAAATCATAATTTCGTTGCTGAATTCGTCTTCGACCGCGGTCATGTACGAGTGCGCGGCAACTCTGGTGAGTCTTTCTTCGGCCCCGACGGCAATCCGGGCTGCGGGGAATACCTATTGCCAGCTGTTGTTATCGCAGAGTGACAACAATGTGAAGCTAATTGTGCTGGATCGGTTACACGAGCTTAAGGTATCGCACAGGGATGTTATGGTGGATATGATCATGGATGTGCTGCGGGCGCTTTCGAGTCCGAATCTGGATATACGGAGGAAAACGTTGGATATAGCCTTGGAATTGATCACTCCCAGGAATATCGATGAGGTTGTCATGACGCTGAAGAAAGAGGTCATGAAAACCCAGAGTGGGGAATCGGAGAAGGATGGAGAATACAGGCAAATGCTAGTGCAGGCGATCCATTCGTGTGCCGTTAAGTTCCCAGAAGTTGCAAGCACTGTTGTTCATCTGCTGATGGAATTTTTAGGGGACAACAATATTGCGTCTGCTATGGATGTTGTTCTCTTCGTGCGTGAGATCATCGAGACTAACCCTAAGCTGAGGGTTTCCATAATTGCAAGGCTTTTGGATACTTTTTATCAGATCCGATCTTCTCGTGTCTGTTCATGTGCGCTTTGGATCATTGGAGAGTACTGTCTCTCTCTGTCCGAAGTAGAAAATGGTATATCGACCATTAATCAATGCCTCGGGGAATTACCATTTTACACAGTGGCCGAGGATGCCGAGGGTTTGGCGACTAATAAATCTCAACCAGTGAACGCCGTTACCGTCTCTTCGAGGAGACCTGCTATTCTTGCCGATGGAACTTATGCTACACAGAGCGCTGCCTCAGAAATTGCCGTTGCGACTGCTGCGATGATTCCTGGATCTGCTACGGCTACCGGAAATCTGAGATCAATCCTTTTAACAGGAGATTTCTTTCTTGGTGCTGTCATTGCCTGTACTTTGACTAAGTTGATTCTTCGTTTGGAAGAGGTGCAACCTTCTGGAGTGGCAGTGAATAAGGCAGCTGCTGAAGCACTGTTGATAATGGTCTCTACGCTGCGCCTTGGTCAATCTTCCGTTCTTCCGCATCCAATTGACGATGACTCCTATGATCGGATTAGTCTCTGCATACGCATTCTAACCTGCCCTGATGATTTCTTCAAGAAAGTATGGTTGCAGTCTTGTCGGGAGAGCTTTATGAATATGCTTGCTGACAAGAAGATCCGAGAAATAGAAGAGAGCAAAGCCAAAGCTCAAGTCTTGCACGCACAGCCTGATGACTTGATTGATTTCCGCCTGTTAAAGAGCAGAAAGGGTATGAGTCAGCTGGAATTAGAAGATGAGGTGGAAGATGATTTGAAGCGTGCTACTGGAGAATTTGTGAAGGATGGGAGCAGTATGAATAAATTGAATCGGATTCTACAACTTACAGGCTTCAGTGATCCGGTATATGCAGAAGCATATGTTACAGTTCATCAATATGATATCGTCCTTGATGTGACAGTAATAAACCGTACGAAGGATACACTGCAGAATCTTTGCTTGGAATTGGCTACCATGGGCGATCTTAAACTGGTAGAACGGCCACAAAATTATACTCTAGCACCAGAATCGACCAAGCAGATAAAAGCTAATATAAAGGTTTCTTCAACCGAAACTGGTGTGATCTTTGGTAACATTGTTTATGAGACAACTAGTGTGCTGGATCGCAATGTAGTTGTTCTGAATGATATACACATAGATATTATGGATTACATCTCTCCAGCAACTTGTCCTGATGTTGCTTTTAGGAACATGTGGGCTGAGTTTGAATGGGAAAACAAGGTGGCTGTTAATACAACAATTCAGGACGAAAAAGAGTTCCTAACCCATATTGTGAGCTCAACTAACATGAAGTGCCTTGCACCTCCGTCTGCATTGGATGGAGATTGTGGATTTCTAGCTGCAAACCTGTATGCCAAGAGCGTCTTTGGTGAAGATGCACTGGTAAATGTTAGTGTTGAGAAACAACCTGATGGCAAGCTGAGTGGTTATATCCGGATAAGAAGCAAAACCCAGGGCATTGCCTTGAGTTTGGGTGATAAAATCACACTCAAACAAAAGGGTTAA___GCCTATGTGAAATATATGCTTTCCTGCGTACTTTGCCTGTGTGATGGTACATTGACTGTTGGGACACTTGTGTCTATTGTCTTCTCTTAGCCTGCTGATTATTTTTGATAAATGCCATTTAGGGGTTATTTTTGAATTGTAAGTAGCTTACAGATCTTTTTGTTGTGTTATTCTTTATTAAAATTGAGTTGCTCTCCCATCGAGTGGGTTAAGCAGTGTTGAGGCCCGTTTGTTGCCCTTTTGGTAATATTTATTGTAACCATGAGATACTAAAGAAGGAAATTTTGCTTGGTTGGAACTTGGAATAAGAAGTATGGATTTTCAACTCAAA

Fln Alignment:

sp_v1.1_unigene31579___NLLQMVVLELIRKVCRSNPAEKGKYXXXXXXXXXXXSTAVMYECAATLVSLSSAPTAIRAAGNTYCQLLLSQSDNNVKLIVLDRLHELKVSHRDVMVDMIMDVLRALSSPNLDIRRKTLDIALELITPRNIDEVVMTLKKEVMKTQSGESEKDGEYRQMLVQAIHSCAVKFPEVASTVVHLLMEFLGDNNIASAMDVVLFVREIIETNPKLRVSIIARLLDTFYQIRSSRVCSCALWIIGEYCLSLSEVENGISTINQCLGELPFYTVAEDAEGLATNKSQPVNAVTVSSRRPAILADGTYATQSXXXXXXXXXXAMIPGSATATGNLRSILLTGDFFLGAVIACTLTKLILRLEEVQPSGVAVNKAAAEALLIMVSTLRLGQSSVLPHPIDDDSYDRISLCIRILTCPDDFFKKVWLQSCRESFMNMLADKKIREIEESKAKAQVLHAQPDDLIDFRLLKSRKGMSQXXXXXXXXXXLKRATGEFVKDGSSMNKLNRILQLTGFSDPVYAEAYVTVHQYDIVLDVTVINRTKDTLQNLCLELATMGDLKLVERPQNYTLAPESTKQIKANIKVSSTETGVIFGNIVYETTSVLDRNVVVLNDIHIDIMDYISPATCPDVAFRNMWAEFEWENKVAVNTTIQDEKEFLTHIVSSTNMKCLAPPSALDGDCGFLAANLYAKSVFGEDALVNVSVEKQPDGKLSGYIRIRSKTQGIALSLGDKITLKQKG
C0PR52_______________DLLQMVVLELIRKVCRSNPAEKGKYIKIIISLLNSSSTAVMYECAATLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLIVLDRLQELKVSHRDVMVDMIMDVLRALSSPNLDIRRKTLDIALELITPRNIDEVVMTLKKEVVKTQSGELEKNGEYRQMLVQAIHSCAVKFPEVASTVVHLLMEFLGDSNLASAMDVVLFVREIIETNPKLRVSIIARLLDTFYQIRSSRVCSCALWIIGEYCLSLSEVENGISTINQCLGELPFYTVAEDAEGLVTNKSQPANAITVSSRRPAILADGTYATQSAASEIAVATAAMLPGSAAATGNLRSILLTGDFFLGAVIACTLTKLILRLDEVQPSGVAVNKAAAEALLIMVSMLRLGQSSVLPHPIDDDSYDRISLCIRILTCPDDFFKKVWLQSCRESFMNMLADKQFRETEENKAKAQVSHAQPDDLIDFRLLKSRKGMSQLELEDEVEDDLKRATGEFVKDGGSMNKLNRILQLTGFSDPVYAEAYVTVHQYDIVLDVTVINRTKDTLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETTSVLDRNVVVLNDIHIDIMDYISPATCPDVAFRNMWAEFEWENKVAVNTTIQDEKEFLTHIVNSTNMKCLAPLSALDGDCGFLAANLYAKSVFGEDALVNVSVEKQPDGKLSGYIRIRSKTQGIALSLGDKITLKQKG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2445	66		33		0.997476
2446			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain