SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31563

Length: 1965 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene31563
AACTCGTCGATCCTCTCGTGTCAATCATATCTTTTGTATCGCAGATCAGGACCCCCGCATTCAATCCCAAATAGTTGAGTCGATGGAAGATTTGGGGTCTCCTGCCCGACTATGGATTTGGGCAGTGGCTTACTTGGTGGTCATGTTGTGGAACCACCGTAATGGCATAGGCGTAGCACGATGTGAAGTAAAACGTGGTTTCAACAAGACTGTGATCGCCAAAGTTTGGGTGGACAGAGAGATTGCTATTGGAGAAACAGATGAGGACTTCATCTGTGCAACTCTGGACTGGTGGCCACCCAACAAATGCGATTACGGGACATGCAGCTGGGGGAACGCCTCCTTACTCAACTTAGATCTTGAAAACCCACTGCTGGCAAATGCTGTAAAAGCTTTCAATCCATTGAAGATAAGATTGGGTGGAACATTGCAAGACAAAGTCATATATGATGTTGGGCATTTGAAGCAACCTTGCCATCCTTTTGTTAAGAATGAATCACTGATGTTTGGATTCACAGATGGATGTCTCCCCATGTCTAGATGGGATGCCCTCAATCACTTTTTCAATAAAACAGGGGCTGTGGTGGCTTTTGGATTGAATGCACTGAATGGAAGGAAAATGATGTCAAATAGAGTTATGGAAGGGCCTTGGGATTCAAGTAATGCTCGTGATTTTATTCAGTATACAGTTGATCATGGTTACAAGATAAATGCATGGGAGTTAGGAAATGAGTTGAGTGGAAGTGGTGTTGGAACAAGCATCAGTTGCAAGCAGTATGCAGCTGATGTAATTCAGCTTGATAAGATTCTGAAACAGATTTACAAGGATTTTCAAAAGAAACCACTCCTTATAGCACCTGATGGATTTTTTGAAGCCAACTGGTTTAAGGAGATTATTCGGCAAACAGGACCAAACATTTTGGATGTTGTTACACATCATATCTACAACCTTGGGGCAGGTGTGGATGAGCACCTTGTGGAAAAGATACTGGATCCATCTTATCTGAGTCGAGAAGCATCCACATTCAAGAGTCTGAAAGCCATTTTGCAGGAATATGGGCCTTGGTCAAGTGCATGGGTGGGTGAAGCTGGTGGAGCTTATAACAGTGGGCACGATCTCGTCACGAATGCTTTTATATTTAGTTTTTGACAAAGCTTGATTGGTGGTAACTATGGCCTTTTAAACACGACGACTTATGTGCCAAATCCTGATTATTACAGTGCACTTCTCTGGCATCGACTAATGGGAAAGCGTGTTCTTTCAACAATTTCTAAAGGAACAGAATATTTGCATGCTTATGCACATTGTACTAAGAATGCGAGAGGAATCACTTTACTGTTGATAAACTTTAGTAGGGACACTCGTATCTCTGTGCAGCTCTCTACCATTTCAGGAATTTTCACAGAAGAAATGGATACAGTCTTGAAGTTTTCAAATGCAAAGGAGCTGAAATCTTTGATTGCAAACAGAAGGAAGAAAAGATTGAGACTGGAGTATCATTTGACGGCTAAAGATGGTAATTTCCACAGCCAAACTATGCTTCTCAATGGGAAAGTTCTTGATGTGACTCCTGAGGGTGAGATACCTTCTTTAGAGCCGGTGACTGTTGATGCCGACAAACGTATTTCTGTAGCACCTCTCTCTATTGCATTTGTGTCTCTTCCAGATGTTCAATTGCCAGCATGCAGCAGTTAGGGGTTGATTATCAAAAACAAAATATCATTCTTTAAGTTGGTTTATGTAAAAAAGATTTAACAACAGCCGAGTTGAATTACCTACTACGGCTGACACACAGTTTTAATAAATCATTTTCAATGCTCAACGAGTAAATTTGTGCTACGGTGTTGAGATGATGGATTGTTTTATCATCTTTTTCCTGCCCTATGTTTTGGGAAATGCTCTGCAAGGAAAGGCTCTGAAATTAAGATGATCATTTCTTCAGTTAAAATATTATGTTTTTGAAG

Ace file of the UniGene sp_v1.1_unigene31563

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heparanase, putative n=1 Tax=Ricinus communis RepID=B9T602_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	beta-glucuronidase precursor	-	-	68%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 79	IPR005199	-	68%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	68%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: your sequence is longer than subject: 538 - 381

Fln protein: MEDLGSPARLWIWAVAYLVVMLWNHRNGIGVARCEVKRGFNKTVIAKVWVDREIAIGETDEDFICATLDWWPPNKCDYGTCSWGNASLLNLDLENPLLANAVKAFNPLKIRLGGTLQDKVIYDVGHLKQPCHPFVKNESLMFGFTDGCLPMSRWDALNHFFNKTGAVVAFGLNALNGRKMMSNRVMEGPWDSSNARDFIQYTVDHGYKINAWELGNELSGSGVGTSISCKQYAADVIQLDKILKQIYKDFQKKPLLIAPDGFFEANWFKEIIRQTGPNILDVVTHHIYNLGAGVDEHLVEKILDPSYLSREASTFKSLKAILQEYGPWSSAWVGEAGGAYNSGHDLVTNAFIFSF*QSLIGGNYGLLNTTTYVPNPDYYSALLWHRLMGKRVLSTISKGTEYLHAYAHCTKNARGITLLLINFSRDTRISVQLSTISGIFTEEMDTVLKFSNAKELKSLIANRRKKRLRLEYHLTAKDGNFHSQTMLLNGKVLDVTPEGEIPSLEPVTVDADKRISVAPLSIAFVSLPDVQLPACSS*

Protein Length: 539

Fln nts: AACTCGTCGATCCTCTCGTGTCAATCATATCTTTTGTATCGCAGATCAGGACCCCCGCATTCAATCCCAAATAGTTGAGTCG_-_ATGGAAGATTTGGGGTCTCCTGCCCGACTATGGATTTGGGCAGTGGCTTACTTGGTGGTCATGTTGTGGAACCACCGTAATGGCATAGGCGTAGCACGATGTGAAGTAAAACGTGGTTTCAACAAGACTGTGATCGCCAAAGTTTGGGTGGACAGAGAGATTGCTATTGGAGAAACAGATGAGGACTTCATCTGTGCAACTCTGGACTGGTGGCCACCCAACAAATGCGATTACGGGACATGCAGCTGGGGGAACGCCTCCTTACTCAACTTAGATCTTGAAAACCCACTGCTGGCAAATGCTGTAAAAGCTTTCAATCCATTGAAGATAAGATTGGGTGGAACATTGCAAGACAAAGTCATATATGATGTTGGGCATTTGAAGCAACCTTGCCATCCTTTTGTTAAGAATGAATCACTGATGTTTGGATTCACAGATGGATGTCTCCCCATGTCTAGATGGGATGCCCTCAATCACTTTTTCAATAAAACAGGGGCTGTGGTGGCTTTTGGATTGAATGCACTGAATGGAAGGAAAATGATGTCAAATAGAGTTATGGAAGGGCCTTGGGATTCAAGTAATGCTCGTGATTTTATTCAGTATACAGTTGATCATGGTTACAAGATAAATGCATGGGAGTTAGGAAATGAGTTGAGTGGAAGTGGTGTTGGAACAAGCATCAGTTGCAAGCAGTATGCAGCTGATGTAATTCAGCTTGATAAGATTCTGAAACAGATTTACAAGGATTTTCAAAAGAAACCACTCCTTATAGCACCTGATGGATTTTTTGAAGCCAACTGGTTTAAGGAGATTATTCGGCAAACAGGACCAAACATTTTGGATGTTGTTACACATCATATCTACAACCTTGGGGCAGGTGTGGATGAGCACCTTGTGGAAAAGATACTGGATCCATCTTATCTGAGTCGAGAAGCATCCACATTCAAGAGTCTGAAAGCCATTTTGCAGGAATATGGGCCTTGGTCAAGTGCATGGGTGGGTGAAGCTGGTGGAGCTTATAACAGTGGGCACGATCTCGTCACGAATGCTTTTATATTTAGTTTTTGACAAAGCTTGATTGGTGGTAACTATGGCCTTTTAAACACGACGACTTATGTGCCAAATCCTGATTATTACAGTGCACTTCTCTGGCATCGACTAATGGGAAAGCGTGTTCTTTCAACAATTTCTAAAGGAACAGAATATTTGCATGCTTATGCACATTGTACTAAGAATGCGAGAGGAATCACTTTACTGTTGATAAACTTTAGTAGGGACACTCGTATCTCTGTGCAGCTCTCTACCATTTCAGGAATTTTCACAGAAGAAATGGATACAGTCTTGAAGTTTTCAAATGCAAAGGAGCTGAAATCTTTGATTGCAAACAGAAGGAAGAAAAGATTGAGACTGGAGTATCATTTGACGGCTAAAGATGGTAATTTCCACAGCCAAACTATGCTTCTCAATGGGAAAGTTCTTGATGTGACTCCTGAGGGTGAGATACCTTCTTTAGAGCCGGTGACTGTTGATGCCGACAAACGTATTTCTGTAGCACCTCTCTCTATTGCATTTGTGTCTCTTCCAGATGTTCAATTGCCAGCATGCAGCAGTTAG___GGGTTGATTATCAAAAACAAAATATCATTCTTTAAGTTGGTTTATGTAAAAAAGATTTAACAACAGCCGAGTTGAATTACCTACTACGGCTGACACACAGTTTTAATAAATCATTTTCAATGCTCAACGAGTAAATTTGTGCTACGGTGTTGAGATGATGGATTGTTTTATCATCTTTTTCCTGCCCTATGTTTTGGGAAATGCTCTGCAAGGAAAGGCTCTGAAATTAAGATGATCATTTCTTCAGTTAAAATATTATGTTTTTGAAG

Fln Alignment:

sp_v1.1_unigene31563___MSRWDALNHFFNKTGAVVAFGLNALNGRKMMSNRVMEGPWDSSNARDFIQYTVDHGYKINAWELGNELSGSGVGTSISCKQYAADVIQLDKILKQIYKDFQKKPLLIAPDGFFEANWFKEIIRQTGPNILDVVTHHIYNLGAGVDEHLVEKILDPSYLSREASTFKSLKAILQEYGPWSSAWVGEAGGAYNSGHDLVTNAFIFSF------------------*QSLIGGNYGLLNTTTYVPNPDYYSALLWHRLMGKRVLSTISKGTEYLHAYAHCTKNARGITLLLINFSRDTRISVQLSTISGIFTEEMDTVLKFSNAKELKSLIANRRKKRLRLEYHLTAKDGNFHSQTMLLNGKVLDVTPEGEIPSLEPVTVDADKRISVAPLSIAFVSLPDVQLPACS
B8LM26_______________MSRWDALNAFFNKTGAVVAFGLNALNGKRWKSDGATDGPWDSSNARDFIQYTVDHGHKIKAWELGNELSGSGVGTSISVEQYAADVIELHGILDGIYKDYEEKPLLIAPDGFFVADWFKEFLNLTGPNIMNVVTHHFYNLGAGVDNDLVEKILNPSYLSQEASTFKGLQAVLQNYGPWSKAWVGETGGAYNSGHNLITNAFVMSFWYLDQLGMASAFSTKSFCRQSLIGGNYGLLNTTTFLPNPDYYSALLWHRLMGTRVLATNSTGTEYLRAYAHCTKSSRGVTLLLINLSRDTGISVQVSTGSGTSTD-----------------------RNSRLEYHLTAKDGDLHSQTVLLNGNILNITPDGEIPSLSAVTVPANRPILVAPLSIAFVNLPYVQFPACS

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
42			66	33	0.997452
43	33	66			0.997452
44	66			33	0.997452
54	50	50			1.0
74		50		50	1.0
101	50	50			1.0
161	40		60		1.0
182			60	40	1.0
248		60	40		1.0
280	25		75		0.99649
423	14		85		0.993533
534		60		40	1.0
555		66		33	1.0
561		33		66	1.0
615			40	40	1.0
637	50		50		1.0
664	80		20		0.995494
790	83		16		0.994512
843	50		50		1.0
847			60	40	1.0
1293	33		66		0.999945
1390	75			25	0.996473
1396	25			75	0.996473
1399	75	25			0.996473
1400	25	75			0.996473
1472		25		75	0.996473
1658		88	11		0.923564
1666		88		11	0.991528
1700	87		12		0.992554
1718			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain