SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31516

Length: 560 nt

Origin of reads: Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene31516
TGGGCGGGAAGGAGAAGGCATAATAGGGGCAATTATTGTAGCTGATGTCTTGCGGGATGATGCAAGGAGCACAGTTTTAAGACTCCAGAAAATGGGAATAAGGACAATCCTGTTATCAGGAGACAGGGAAGAGGCAGTGGCAAGTGTAGCTGAAATGGTTAGGATAAACGACGCACACAATATCAATGCATGCCTTCGGCCACATGAGAAAAGCAACTTCATATCATCACTGCAAAAGCAGGGGCATTCTGTAGCCATGGTAGGAGATGGAATAAATGATGCACCATCCTTGGCACTTGCTGATGTTGGAGTGGCTCTACGACTGCAAGCAAGAGACGATGCTGCTTCTGATGCAGCATCTGTCATACTCCTTGGCAATAGACTTTCGCAGATATTGGAGGCTATTGACCTTGCAAGAGCAACAATCAGCAAAGTCCATCAGAATCTGGCCTGGGCTATTGCATATAATACATTTGCAATACCTTTAGCAGCAGGGGTCTTACTTCCATCTTTCAATTTTGCACTGACGCCTTCAATGTCAGGTGGGATGATGGCCTTGA

Ace file of the UniGene sp_v1.1_unigene31516 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Copper P1B-ATPase n=2 Tax=Glycine max RepID=A7ISW5_SOYBN	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	p-type atpase	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	copper ion transport	GO:0006825	Biological Process	82%
Blast2go	metabolic process	GO:0008152	Biological Process	82%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	82%
Blast2go	copper ion transmembrane transporter activity	GO:0005375	Molecular Function	82%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	82%
Blast2go	Haloacid dehalogenase-like hydrolase	IPR005834	-	82%
Blast2go	HAD-like domain	IPR023214	-	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 186 - 998

Fln protein: GREGEGIIGAIIVADVLRDDARSTVLRLQKMGIRTILLSGDREEAVASVAEMVRINDAHNINACLRPHEKSNFISSLQKQGHSVAMVGDGINDAPSLALADVGVALRLQARDDAASDAASVILLGNRLSQILEAIDLARATISKVHQNLAWAIAYNTFAIPLAAGVLLPSFNFALTPSMSGGMMAL

Protein Length: 187

Fln nts: TGGGCGGGAAGGAGAAGGCATAATAGGGGCAATTATTGTAGCTGATGTCTTGCGGGATGATGCAAGGAGCACAGTTTTAAGACTCCAGAAAATGGGAATAAGGACAATCCTGTTATCAGGAGACAGGGAAGAGGCAGTGGCAAGTGTAGCTGAAATGGTTAGGATAAACGACGCACACAATATCAATGCATGCCTTCGGCCACATGAGAAAAGCAACTTCATATCATCACTGCAAAAGCAGGGGCATTCTGTAGCCATGGTAGGAGATGGAATAAATGATGCACCATCCTTGGCACTTGCTGATGTTGGAGTGGCTCTACGACTGCAAGCAAGAGACGATGCTGCTTCTGATGCAGCATCTGTCATACTCCTTGGCAATAGACTTTCGCAGATATTGGAGGCTATTGACCTTGCAAGAGCAACAATCAGCAAAGTCCATCAGAATCTGGCCTGGGCTATTGCATATAATACATTTGCAATACCTTTAGCAGCAGGGGTCTTACTTCCATCTTTCAATTTTGCACTGACGCCTTCAATGTCAGGTGGGATGATGGCCTTGA

Fln Alignment:

sp_v1.1_unigene31516___VADVLRDDARSTVLRLQKMGIRTILLSGDREEAVASVAEMVRINDAHNINACLRPHEKSNFISSLQKQGHSVAMVGDGINDAPSLALADVGVXXXXXXXXXXXXXXXSVILLGNRLSQILEAIDLARATISKVHQNLAWAIAYNTFAIPLAAGVLLPSFNFALTPSMSGGMMAL
B8LQ20_______________ISDPLKREAAVVIEGLKKMGILPIMVTGDNWTTARAVAQELGIED---VKAEVIPAGKAEVIRSLQKDGTMVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADY--VLMRNNLEDVITAIDLSKKTFARIRLNYVFAMGYNIFAIPLAAGLFFPFLKISLPPWVSGAAMAL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
383		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain