SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31502

Length: 1709 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene31502 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains	-	-	3.0e-13	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	type-b response regulator	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Blast2go	Signal transduction response regulator, receiver domain	IPR001789	-	83%
Blast2go	Myb DNA-binding domain, plants	IPR006447	-	83%
Blast2go	Homeodomain-like	IPR009057	-	83%
Blast2go	CheY-like superfamily	IPR011006	-	83%
Blast2go	Homeodomain-related	IPR012287	-	83%
Blast2go	Myb, DNA-binding	IPR014778	-	83%
Blast2go	Myb domain, DNA-binding	IPR017930	-	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9D6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 271 aas, your sequence is shorter than subject: 316 - 465

Fln protein: MATGPAFECSQGLPEFAKKESCSSVNPLNSVSVTSPVMEGVPDQFPAGLRVLVVDDDPTCLKILEKMLQTCRYEVTTCSRATVALSMLRERKGAFDLVISDVYMPDMDGFKLLEHVGLEMDLPVIMMSADGETSVVMKGIKHGACDYLLKPVRIEALKNIWQHVIRKKRNESKELEHSGSVDDSDRHKKGSDDVEYASSVNEGNNGMWKPSKKRKDAREEEDDGEQDNDDSSNLKKPRVVWSVELHQQFVCAVNQLGIDKAVPKRILELMNVQGLTRENVASHLQVMQYNLHQELFLHLLDQQSFFLPFHMHPIM*

Protein Length: 317

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCATGCTGGCCGACGGTGACGGAGAAACGTACCGCCTGGATGACACTCATTTTCGTTAAAAGAGTCTTCATGGCGACGGACATCCGCCCACCGTCAATTAACGGTGAGTGGATGGATGGACTATGCCGATGTTGATGCTGGTGCTACTGAAGAGTGTTAACGCCGTACCGTCCGTTTGTTCATTCATTTCATTCACGCGTTAGTTGGCGTTGTGTGTCAGCGTAATTGTGCGCGGCCTGCCTGCCTGCCTGCTGGATCGATCCGTTCTTCGACCCTCTTTGTAGCAGAGATCTGCGGTTCGAATCCTGAGAACTCCGATTCCTAAATTCGGCTCGAATCGCCCTAGAAGTCAAGCCGTAGAGGGTCCTGCAATCTCACCGGCCCATCGTGGTCGAATACTTCAGATCACGGTCCGAAGCCCGAATCCTGCTAAAATTCATATACATCCCGTACTGTTCTGGTCCCGTGAAATTTCCTAATATGTCTTAGATAAATTATTATTATTTATATAAGTATGGGATTTAAGAAATACTGCAATTTTTCCTCGCTTTTGCCCCGTCCTTTAATCGGCCGTTTTTCTCTTGCAAACATCAGCCCTTCTTCAAAGTTTTTAGCAGTCTTAGCCTTGCTGCCGCATTGATTCCGTTATTAACTAGGTCTCTTCGCCCTATCCGTAGCCGTAATCTTGGATCCCGAAGCGGCC_-_ATGGCAACAGGTCCTGCTTTCGAATGCTCGCAGGGTTTGCCGGAATTCGCGAAGAAAGAAAGTTGTTCGAGTGTGAACCCGCTCAACAGCGTTTCGGTTACCAGTCCTGTAATGGAGGGCGTCCCGGATCAGTTCCCCGCTGGTCTTCGAGTTCTGGTGGTAGACGATGATCCGACTTGCCTCAAAATTCTGGAGAAAATGTTGCAAACCTGCCGATATGAAGTTACAACATGTTCTCGAGCAACGGTGGCTTTATCCATGCTTCGAGAGAGAAAGGGTGCTTTTGATCTAGTTATCAGTGATGTGTACATGCCTGACATGGATGGATTCAAACTCCTTGAACATGTTGGACTGGAGATGGACCTTCCTGTCATCATGATGTCAGCAGATGGTGAAACAAGCGTAGTAATGAAAGGGATCAAACATGGGGCATGTGACTACCTGTTAAAACCAGTACGCATAGAGGCTCTCAAAAATATATGGCAACATGTGATTCGGAAAAAACGTAATGAGTCGAAGGAACTGGAACATTCAGGCAGTGTAGATGACAGTGATAGGCATAAAAAAGGATCAGACGATGTGGAATATGCATCGTCAGTAAATGAAGGAAATAATGGCATGTGGAAGCCTTCAAAGAAAAGAAAGGACGCCAGGGAAGAGGAAGATGATGGTGAGCAGGATAACGATGATTCCTCTAACCTGAAAAAACCACGAGTTGTCTGGTCTGTCGAGCTCCATCAGCAATTTGTCTGTGCTGTAAACCAGCTAGGGATTGACAAAGCTGTTCCAAAGAGAATACTCGAACTCATGAATGTTCAAGGCCTTACAAGGGAAAATGTGGCAAGTCACTTGCAGGTAATGCAGTACAATTTACACCAGGAACTGTTTTTGCATCTTTTGGATCAACAATCATTCTTCCTCCCTTTTCATATGCACCCAATTATGTAAACTAGTAGCAATGCTGTCATATTCCGTATTAA

Fln Alignment:

sp_v1.1_unigene31502___MMSADGETSVVMKGIKHGACDYLLKPVRIEALKNIWQHVIRKKRNESKELEHSGSVDDSDRHKKGSDDVEYASSVNEGNNGMWKPSKKRKDARXXXXXXXXXXXDSSNLKKPRVVWSVELHQQFVCAVNQLGIDKAVPKRILELMNVQGLTRENVASHLQVMQYNLH
D5A9D6_______________VMSTNGDTSVVMKGITHGACDYFIKPIRIEELRNIWQHVVRRRGRESLK-DDLGECED----REASDSPETTS-------------KKRKDTSSGDFSDEVIDDISS-LKRARVHWTVQLHQQFVVAVNQLGIDKAVPKKIVEIMKVQGLSRENVASHLQ--KYRLY

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
910	28		71		1.0
948		71		28	1.0
956		85		14	0.993533
957		85	14		0.993533
958	14			85	0.993533
960		85		14	0.993533
963	14		71		0.984337
967			14	85	0.993533
969		28	71		1.0
970	85	14			0.993533
971	85	14			0.993533
972	85		14		0.993533
973			85	14	0.993533
977		16	83		0.994512
981		83	16		0.994512
1052		11	88		0.991528
1053	88	11			0.991528
1071		37	62		1.0
1088		85	14		0.993533
1089	14			85	0.993533
1090			14	85	0.993533
1102			85	14	0.993533
1104		14		85	0.993533
1107		14		85	0.993533
1159	66			33	1.0
1187	81		18		0.999994
1261	90		10		0.90298
1263			10	90	0.90298
1264	10			90	0.90298
1265		10		90	0.90298
1271	10		90		0.90298
1274			10	90	0.90298
1276		90		10	0.90298
1278		10	90		0.90298
1280	10		90		0.90298
1282			10	90	0.90298
1378		10	90		0.90298
1380	90		10		0.90298
1446	87	12			0.992554
1447		12	87		0.992554
1450		12	87		0.992554
1451			87	12	0.992554
1482		16	83		0.994512
1483	83	16			0.994512
1488	83	16			0.994512
1489		83		16	0.994512
1490	80	20			0.995493
1492		80		20	0.995493
1604	66	33			0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain