SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31474

Length: 178 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene31474
CGTCGTGACCTTGGCTGTCACTCATTTATAGCTATGGCGTGGTATTTCTGGAATTACTTTCTGGCAAGAAGTCTCTGGATCCATCATTCTCTTCCTATGGAAATGGGTTCAACATTGTTTCTTGGGCATGCATGCTGGTCAGAGAAGGCAGGGGACATGAGTTCTTCATCCCTGGCTT

Ace file of the UniGene sp_v1.1_unigene31474

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RPK2; RPK2 (RECEPTOR-LIKE PROTEIN KINASE 2); ATP binding / kinase/ protein serine/threonine kinase	-	-	6.0e-16	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	receptor-like protein kinase	-	-	8.41897e-21	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	radial axis specification	GO:0009945	Biological Process	8.41897e-21	87%
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	8.41897e-21	87%
Blast2go	response to water deprivation	GO:0009414	Biological Process	8.41897e-21	87%
Blast2go	response to cold	GO:0009409	Biological Process	8.41897e-21	87%
Blast2go	embryonic meristem development	GO:0048508	Biological Process	8.41897e-21	87%
Blast2go	lignin metabolic process	GO:0009808	Biological Process	8.41897e-21	87%
Blast2go	pollen maturation	GO:0010152	Biological Process	8.41897e-21	87%
Blast2go	anther development	GO:0048653	Biological Process	8.41897e-21	87%
Blast2go	pollen germination	GO:0009846	Biological Process	8.41897e-21	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.41897e-21	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB18

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 46 aas, your sequence is shorter than subject: 58 - 212

Fln protein: S*PWLSLIYSYGVVFLELLSGKKSLDPSFSSYGNGFNIVSWACMLVREGRGHEFFIPG

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATAGCTATGGCGTGGTATTTCTGGAATTACTTTCTGGCAAGAAGTCTCTGGATCCATCATTCTCTTCCTATGGAAATGGGTTCAACATTGTTTCTTGGGCATGCATGCTGGTCAGAGAAGGCAGGGGACATGAGTTCTTCATCCCTGGCTT

Fln Alignment:

sp_v1.1_unigene31474___IYSYGVVFLELLSGKKSLDPSFSSYGNGFNIVSWACMLVREGRGHEFFIPG
D5AB18_______________VYSYGVVFLELLSGKKSLDPSFSSYGNGFNIVSWACMLVREGREHEVFIPG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
54	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain