SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31460

Length: 1035 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31460

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glucose-methanol-choline (gmc) oxidoreductase, putative (EC:4.1.2.10)	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	protein	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glucose-methanol-choline oxidoreductase, N-terminal	IPR000172	-	0.0	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXU5

Fln msg: Distance to subject end: 216 aas, your sequence is shorter than subject: 324 - 558

Fln protein: METMLAVNVHAWFLLMLLMLSSDLLKSSCNAATPPSKSNPSGFMTVDGERAAAKRYDYIVVGGGTAGCPLAATLSTKYSVLVIERGGSPYGVPEIENAKAFGNLLGETDNYTSPAQSFVTEDGLTLARARVLGGGTALNAGFYSRASSEYVGHMGWNETLVKESYEWVEKQNAFRPDHLSKWSLAFRNGLLEAGVVPYNGYTLNHVEGSKISASTFDNKGIRHTAADLLKSAKPSNIVVLLNATVSRILFRSPASEGKKGGFFGKPKARGVQFMDAHGRSYRVFLKRSSRSSEVIVSAGSIGSPQLLMLSGIGPSQHLKQFNIP

Protein Length: 325

Fln nts: CGTCGTGACCTTGGCTGTCATTCGACATCTTCAGAAGCCCTGGTGTGGTTGAACTCTTTGTG_-_ATGGAGACAATGTTGGCCGTGAATGTCCATGCATGGTTTCTTCTAATGTTACTGATGCTAAGCAGCGATTTGCTGAAATCCTCTTGTAATGCAGCCACACCACCCTCGAAATCGAATCCGTCTGGGTTTATGACTGTGGATGGTGAGAGAGCAGCTGCAAAAAGATATGACTACATTGTTGTTGGAGGAGGAACGGCCGGCTGCCCCCTTGCAGCAACGCTGTCTACCAAGTATTCTGTTTTGGTCATAGAGAGGGGAGGATCTCCCTACGGAGTTCCCGAAATCGAGAATGCCAAAGCTTTTGGAAATCTATTGGGGGAGACTGACAATTACACTTCCCCAGCACAATCATTTGTTACAGAGGATGGACTGACTTTAGCGAGAGCTAGGGTTCTGGGAGGTGGAACTGCTCTCAATGCCGGCTTCTACAGCAGGGCGAGCTCCGAATATGTCGGTCATATGGGATGGAATGAGACACTTGTAAAGGAGTCATATGAATGGGTGGAGAAGCAGAACGCCTTCCGACCAGATCACCTCTCCAAGTGGTCGTTGGCTTTCAGAAATGGGCTCCTGGAAGCAGGAGTTGTTCCATACAATGGATATACGTTGAATCATGTAGAAGGATCCAAGATCAGCGCCTCCACCTTCGACAACAAAGGCATAAGACACACAGCAGCAGATCTTCTCAAGTCTGCCAAACCCAGCAATATCGTAGTGCTTCTCAATGCTACCGTCAGCAGGATTCTCTTCAGATCCCCTGCATCTGAAGGAAAGAAGGGTGGCTTCTTTGGGAAGCCGAAGGCCCGCGGAGTACAATTCATGGATGCCCATGGTCGGTCTTATCGAGTTTTTCTGAAACGATCATCACGTTCCAGCGAGGTAATCGTGTCTGCAGGATCCATAGGCAGCCCCCAGCTGCTGATGCTGAGCGGAATTGGCCCATCTCAACATCTCAAACAATTCAATATTCCTC

Fln Alignment:

sp_v1.1_unigene31460___AATPPSKSNPSGFMTVDGERAAAKRYDYIVVGGGTAGCPLAATLSTKYSVLVIERGGSPYGVPEIENAKAFGNLLGETDNYTSPAQSFVTEDGLTLARARVLGGGTALNAGFYSRASSEYVGHMGWNETLVKESYEWVEKQNAFRPDHLSKWSLAFRNGLLEAGVVPYNGYTLNHVEGSKISASTFDNKGIRHTAADLLKSAKPSNIVVLLNATVSRILFRSPASEXXXXXXXXXXXARGVQFMDAHGRSYRVFLKRSSRSS-------------------EVIVSAGSIGSPQLLMLSGIGPSQHLKQFNIP
A9NXU5_______________AATTPS-GFPFAFMTVDGERAAARRYDYIVVGGGAAGCPLAATLSTRYSVLVLERGGSPYGNPDIQNADAYGKVLLETDNYTSPAQAFISEDGVSSARARVLGGGTAINAGFYSRASSDYVSNAGWDEGLVEESYEWVEKQNAFKPQHLSPWSSAIRDGLVEAGVLPYNGYTLDHLDGTKISASIFDSKGKRHTAADLLKSANPDNIVVLLNATVSRVLFNSPAEE-TKDGSSQKPRASGVEFMDGHGRSYQVFLNESSRSSKDFDQNQSKNILEEKGKGPEVILTAGALGSPQLLLLSGIGPSKHLRELNIP

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
111		50		50	1.0
220	16	83			0.994512
221	16	16			0.988813
419		25		75	0.996473
688			27	9	1.0
689	45		36	9	1.0
809		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain