SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31456

Length: 895 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31456

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative multidrug resistance protein n=5 Tax=Poaceae RepID=MDR_ORYSJ	-	-	2.0e-32	53%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	74%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	9.87533e-33	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.87533e-33	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon at 3' end. Distance to subject end: 29 aas, your sequence is shorter than subject: 247 - 1316

Fln protein: KLFGGGNKGVQLAGGQKQQIGIAKAIIKKPSIxxxxxxxxxEKIVQEELDRIMVGRTNIVIADRLTTIQNGDSIVVIQYGKVIETVLNNFVCRIYSAENDNLSL*AIRLWTSGMEAVVFITSKALFQVFFG*HRKSDSRSRKYEQPHR*ML*CC*SCIWHPR*RKPHKLRR*KGGENR*DKRKRGVEKGRLCLPSSSRCYYLQEFLVEDKSSQKYSSGRTKRIRKVDHHWIN*KILRPAAKSIGDN*

Protein Length: 248

Fln nts: AAGCTCTTTGGAGGGGGAAACAAAGGAGTTCAATTAGCAGGAGGGCAAAAGCAGCAGATTGGGATAGCGAAGGCGATCATAAAGAAACCAAGCATAxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGAAGATCGTTCAAGAGGAGCTGGACAGAATAATGGTGGGAAGAACGAACATTGTGATAGCTGATAGACTGACTACCATTCAGAATGGAGATTCTATTGTTGTGATTCAATATGGGAAAGTGATTGAGACAGTATTAAACAATTTTGTTTGCAGGATTTACTCTGCCGAGAATGACAATTTGTCACTTTAAGCAATACGGCTCTGGACTTCTGGTATGGAGGCAGTTGTTTTCATCACTTCCAAAGCTCTTTTCCAGGTTTTCTTCGGATAGCACCGAAAAAGTGATAGCAGAAGCAGGAAGTATGAGCAGCCACATCGCTAAATGCTCTGATGTTGTTAAAGCTGTATTTGGCATCCTAGATAGAGAAAGCCGCATAAACTGAGACGATGAAAGGGGGGAGAAAACAGATAGGATAAAAGGAAACGTGGAGTTGAGAAAGGTAGACTTTGTTTACCCAGCTCGTCCAGATGTTATTATCTTCAAGAATTTCTGGTTGAGGATAAAAGCAGTCAAAAGTATAGCTCTGGTAGGACAAAGCGGATCAGGAAAGTCGACCATCATTGGATTAATTGAAAGATTCTACGACCTGCGGCTAAAAGCATCGGTGATAATTAATGGCAGTGAGATATCAGAACCTTTCAATCTAAGGAGTCGTAGGCCAAGTAACCAGTCTGTTGTGGAGGAAGCATTGGAGACAACAATCTGTATGGCAAAGAGAATGCTCACGATTTATCAGTAAGCACTGCAGTTGAAAGTTTGAGGTGTATTAT

Fln Alignment:

sp_v1.1_unigene31456___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
E6Y0T0_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 5)

Position	A %	C %	G %	Probability
533	33		66	0.997453
569	50		50	1.0
653	25		50	0.995533
690		50	50	1.0
769	33		66	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain