SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31446

Length: 409 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene31446
TACGGATGTTTGTTTCTTCCTATTGACCCTTGCTTCGCTTTCTCTGATTCTGTTCGTTGGAAAGATTAATTTGTGGGGAGCACTGGCTTTTATTTCAATATACATCCTATATGCATTCACTCTTGCAGCAAATGAGTTTATGAGGAAACAAACCCGGAAGTTAAAGTGGGATTCAATGACACCCATGCAGTCTTTCCCTGGAAGTACTATTCCTCTCGGTTGTGAAGATGAAGATGATTCCATGTATAGTCCTCTGTTGGATTTAGAGTCAACTACAGGGTTGGCTGATGGTCATGGACGCTTGGAGACTTCATTGCCTCAATGGATGTGGGCTTCGAATGTAGCTATTTTCTCAAATCAGGGACTGTCAAAGACAGTAGAAGAGACTAGGCCTCTGTGGGATGGAGTG

Ace file of the UniGene sp_v1.1_unigene31446

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cation/calcium exchanger 4 n=2 Tax=Arabidopsis RepID=CCX4_ARATH	-	-	2.0e-22	48%
FL-Next	sp=Cation/calcium exchanger 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	potassium-dependent sodium-calcium exchanger-like protein	-	-	4.35012e-25	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular cation homeostasis	GO:0030003	Biological Process	4.35012e-25	67%
Blast2go	response to cation stress	GO:0043157	Biological Process	4.35012e-25	67%
Blast2go	cation transport	GO:0006812	Biological Process	4.35012e-25	67%
Blast2go	sodium ion transmembrane transporter activity	GO:0015081	Molecular Function	4.35012e-25	67%
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	4.35012e-25	67%
Blast2go	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	4.35012e-25	67%
Blast2go	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	4.35012e-25	67%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	4.35012e-25	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SYG9

Fln msg: Distance to subject end: 268 aas, your sequence is shorter than subject: 136 - 644

Fln protein: TDVCFFLLTLASLSLILFVGKINLWGALAFISIYILYAFTLAANEFMRKQTRKLKWDSMTPMQSFPGSTIPLGCEDEDDSMYSPLLDLESTTGLADGHGRLETSLPQWMWASNVAIFSNQGLSKTVEETRPLWDGV

Protein Length: 137

Fln nts: TACGGATGTTTGTTTCTTCCTATTGACCCTTGCTTCGCTTTCTCTGATTCTGTTCGTTGGAAAGATTAATTTGTGGGGAGCACTGGCTTTTATTTCAATATACATCCTATATGCATTCACTCTTGCAGCAAATGAGTTTATGAGGAAACAAACCCGGAAGTTAAAGTGGGATTCAATGACACCCATGCAGTCTTTCCCTGGAAGTACTATTCCTCTCGGTTGTGAAGATGAAGATGATTCCATGTATAGTCCTCTGTTGGATTTAGAGTCAACTACAGGGTTGGCTGATGGTCATGGACGCTTGGAGACTTCATTGCCTCAATGGATGTGGGCTTCGAATGTAGCTATTTTCTCAAATCAGGGACTGTCAAAGACAGTAGAAGAGACTAGGCCTCTGTGGGATGGAGTG

Fln Alignment:

sp_v1.1_unigene31446___VGKINLWGALAFISIYILYAFTLAANEFMRKQTRKLKWDSMTPMQSFPGSTIPLGCEDEDDSMYSPLLDLESTTGLADGHGRLETSLPQWMWASNVAIFSNQGLSKTV-EETRPLW
Q9SYG9_______________VGKVTVGIAIAFVSIYVFYASLVAANEILRKHSRRLKLDSITPLLPMQGSVFSSPSVEEDIPMYSPLMELDT----GEGPPRLHDSLPQWMWATNVAIYSNHFAKANVHDEERPPW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain