SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31427

Length: 3630 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene31427
CGTCGTGACCTTGGCTGTCACTCACCAATCGTCGTTCCTTGGCTGTCTTCATTTCCTTCTCTGAAAACTTCTCGGTTGCGAACACTTATCAATCAAAGTTTGAATTGGCAGCATCAACTCTGTAAAAATCCAAGGCCCAACCCAGACATAAAAACACTGTTTGTTGATCACAGTTGTGGTGCACAGCCGAATGGAGCTCGCGCACCATCTCCTGCAACTAATCCTCTTATGGCAACGATTCCGAAAGGGGGAGGCTTCCCGCCACTTGGTGCTCATGGGGCCCCATTTCAAGCAGCACCTGCACCTGTTGCTACTGCCTTAGCAGGCTGGATGGCTAATGCCACTCCTGCACCTCATCCTGCAGTCTCTGCTGGGCCAATTGGACTTAGTGCTGCAGCAAATACAGCTGCTTTGTTGAAGCGCCCGAGGACCCCTCCTAATCCTCCCTTAGGGGATTATCAGTCAGCTGATTCTGATCACATTCTAAAACGAGCAAGGACAATCGGGCAGTCTGGTGATGAGGTTAGCTATTCTGGCCCAAATCTTCCACAGGGCTTATATTCGCAAGATGACCTTCCCAAGATTGTTGCACGAACTTTAAATCAGGGAGCTCCAGTGAAGAGCATGGATTTTCATCCTTTGCAGCAGACCATACTTTTAGTCGGTACACATGTGGGTGAAATTGGTGTATGGGAAGTGGGTTCACAGGAAAGACTAGCTCACAGAAATTTCAAAGTTTGGGATCTTGGATCTTGTTCAGCTTCCATGCAGGCAGCAGTTCTCAAGGATCCTCTTGTATCAGTCAATCGTGTTGTGTGGAATCCAGATGGTTCTTTGTTTGGAGTAGCTTATTCAAAGCACATAGTGCACATATATTCCTTCCATGTTGGTAATGACTTACGGCAACACTTGGAGATTGACGCCCATGTTGGAGGTGTAAATGACCTTGCTTTTTCACATCCCAACAAGCAATTGTGTATTATTACCTGTGGAGATGACAAAACAATAAAGGTATGGGATGCTGTTACTGGTGTGAAGCAATATACTTTTGAAGGTCATGAAGCACCCGTGTATTCTGTATGCCCCCATTATAAAGAAAATATTCAGTTTATTTTTTCGACGGCTATTGATGGCAAGATAAAGGCTTGGTTATATGATCTGATGGGTTCAAGGGTTGATTATGATGCTCCTGGTCAGTGGTGCACTACAATGGCTTATAGTGCTGATGGGACAAGGCTCTTCTCATGTGGAACAAGCAAAGAAAGAGAATCTTTTCTTGTTGAATGGAATGAGAGTGAAGGTGCTATAAAGCGTACTTATCAAGGATTTTGTAAGCGCTCTTTGGATATTGTGCAGTTTGATACGACTAAGAACCGCTTTTTGGCTGCTGGAGATGAATATTTGATCAAGTTTTGGGACATGGACAACACAGCCCTGCTGACAACTGTTGATGCTGACGGTGGATTAGCTAATACTCCTCGTCTTCGCTTCAACAAGGAAGGGTCGTTATTGGCAGTTTCAACCAGTGATAATGGCATCAAAATTTTAGTCAATGCTGATGGCCACAGATTATTACGCTCATTTGAGAACCGTGCCTTTGATGCAGCAAGAGTTCCTTCTGATACGAAGGTGTCAGTAGTAACTCAAATGGCATCTGTAAGCACACCTGGGGCACAAACTGTTGGGGGATCTGATCGGGTTGCTTCCACAGTTTCCATGGCTGGACTGAATGGAGTGGATTCTAGGAGTGTTGGAGATAAGGTCAGAGTGGCAGAAGATTCAGTAGATAAAAACAAGAACTGGAAGCTAACTGAAATATCCGAACCAGCTCAGTGCCGGTCCTTGAGACTCTCAGATAACCTACCAACAAGCAAGATTTCAAGATTAATATATACTAATTCAGGAGTTGCGATTCTGGCATTGGCTTCCAATGCTGTGCACAAGCTCTGGAAATGGCAGCGAAATGATCGCAATGCTAGTGGCATGGCAGCAACCAGTATTCCACCTCAGTTATGGCAACCTGCCAGTGGCATACTGATGACAAATGACATAAGTGATACTAATCCCGAGGATGCTGTTCCCTGCTTTGCATTATCTAAAAATGACTCGTATGTTATGTCAGCCAGTGGTGGAAAAGTTTCTTTGTTCAATATGATGACATTCAAGACAATGACAACTTTCATGGCACCACCACCACCAGCAACTTTTCTTGCTTTCCACCCGCAGGACAACAACATAATTGCTATTGGCATGGAAGACTCTACAATTCAAATTTACAATGTTCGAGTGGATGAGGTAAAGAGCAAGCTTAAAGGACATCAAAAGAGAGTGACTGGGCTTGCTTTTTCTCATGCACTGAATGTGCTTGTATCATCAGGAGCAGATGCTCAGCTTTGCGTATGGGGAACCGATGGCTGGGAAAGGCTTAGGAATAAGTTTTTACAGCTACCAGCAGGCAGATCGCCACCACAGGCAGAAACTCGAGTGCAATTTCACCAGGATCAGATACACTTTTTGGTTGTGCATGAAACTCAAATCGCTATTTATGAAGCTAATAAACTTGAGTGTCTCAAACAGTGGATCCCCACGGAGTCACTTTCTGCTCCAATATCCCATGCTACTTACTCATGTGATAGTCAACTAATATATGCTAGCTTTTTTGATGGTGCGGTGGGTGTATTCCATGCTGGATCACTGCGGTTACGATGTCGAATTAGTCCATCATCGTATCTTTCACCTAGTGTCAGCTCTGGTGTGTACCCGCTTGTAATTGCAGCTCATCCTTCTGAGCCAAATCAATTTGCATTGGGATTGTCTGATGGGGGTGTACATGTTTTGGAGCCTTTAGAGTCGGAAGGAAAGTGGGGTACTGGACCACCTGTGGAAAATGGGTTGGCAAGCAATGCTTCTACTGTTCTTACAACTGGAACTTCAGGTTTAGAGCAAGCTCCAAGGTGATTTGTTTCTATCGAATATTTGCATATTTGCACTGAACCCCAACTCCTAGCTCTTACGTGGTGATCACATGTTTTAATGTGGGTCCCCCATTTATTGTGTAGCCTTTGAGCTATGACGTTGAGTGCCTTTTGTATTCAAGGTTTACATTGCATACTGTGATGCCAACTTGCACCAATGCTAGTGGCTCCATGTCTTTCTTAATGCATGAGTTAAGCTGTCTATATGAAGTCATTGCTGGAAATCCCTTCTGGGTATCGATAGTCAAGATCGGTGGCTCATGTTTAGTTTGAAAATGTATTTGTTGTTTTAAAAATTGTTAGGTGTATCACTAAGCAAGGGATCACACACACTGCTTTCCATAAAAAATTGTAGGCTTGTGAGGTTTAAAGAGTTGTGTCTTCCAGGTTTCAATGTGAAAAGAAACTTGATCGATTTGTTTACGGATTATTATTTTGTAAGATTCCGGCAATTTTGGAGCTGAGGTTTCCACTTTGAAATATTCAAATCAGATAAATGAATTAAACCAACTAATGGGTCTGCTGACTATTATAATACTCTGTTATATCTTATTATATTTACATGCCATATCGAAGGTGAATGCTTTATTTATCAAGATAAGCATTAGGGTATGCTAACCATCTTACTAGCTTCCACATGGTGGATGTTACTTGC

Ace file of the UniGene sp_v1.1_unigene31427

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RVD2_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	tpl protein binding protein homodimerization transcription repressor	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	80%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	80%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	80%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	80%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	80%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%
Blast2go	cytosol	GO:0005829	Cellular Component	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAF2

Fln msg: your sequence is longer than subject: 910 - 238

Fln protein: MATIPKGGGFPPLGAHGAPFQAAPAPVATALAGWMANATPAPHPAVSAGPIGLSAAANTAALLKRPRTPPNPPLGDYQSADSDHILKRARTIGQSGDEVSYSGPNLPQGLYSQDDLPKIVARTLNQGAPVKSMDFHPLQQTILLVGTHVGEIGVWEVGSQERLAHRNFKVWDLGSCSASMQAAVLKDPLVSVNRVVWNPDGSLFGVAYSKHIVHIYSFHVGNDLRQHLEIDAHVGGVNDLAFSHPNKQLCIITCGDDKTIKVWDAVTGVKQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDLMGSRVDYDAPGQWCTTMAYSADGTRLFSCGTSKERESFLVEWNESEGAIKRTYQGFCKRSLDIVQFDTTKNRFLAAGDEYLIKFWDMDNTALLTTVDADGGLANTPRLRFNKEGSLLAVSTSDNGIKILVNADGHRLLRSFENRAFDAARVPSDTKVSVVTQMASVSTPGAQTVGGSDRVASTVSMAGLNGVDSRSVGDKVRVAEDSVDKNKNWKLTEISEPAQCRSLRLSDNLPTSKISRLIYTNSGVAILALASNAVHKLWKWQRNDRNASGMAATSIPPQLWQPASGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKVSLFNMMTFKTMTTFMAPPPPATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRVTGLAFSHALNVLVSSGADAQLCVWGTDGWERLRNKFLQLPAGRSPPQAETRVQFHQDQIHFLVVHETQIAIYEANKLECLKQWIPTESLSAPISHATYSCDSQLIYASFFDGAVGVFHAGSLRLRCRISPSSYLSPSVSSGVYPLVIAAHPSEPNQFALGLSDGGVHVLEPLESEGKWGTGPPVENGLASNASTVLTTGTSGLEQAPR*

Protein Length: 911

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCAATCGTCGTTCCTTGGCTGTCTTCATTTCCTTCTCTGAAAACTTCTCGGTTGCGAACACTTATCAATCAAAGTTTGAATTGGCAGCATCAACTCTGTAAAAATCCAAGGCCCAACCCAGACATAAAAACACTGTTTGTTGATCACAGTTGTGGTGCACAGCCGAATGGAGCTCGCGCACCATCTCCTGCAACTAATCCTCTT_-_ATGGCAACGATTCCGAAAGGGGGAGGCTTCCCGCCACTTGGTGCTCATGGGGCCCCATTTCAAGCAGCACCTGCACCTGTTGCTACTGCCTTAGCAGGCTGGATGGCTAATGCCACTCCTGCACCTCATCCTGCAGTCTCTGCTGGGCCAATTGGACTTAGTGCTGCAGCAAATACAGCTGCTTTGTTGAAGCGCCCGAGGACCCCTCCTAATCCTCCCTTAGGGGATTATCAGTCAGCTGATTCTGATCACATTCTAAAACGAGCAAGGACAATCGGGCAGTCTGGTGATGAGGTTAGCTATTCTGGCCCAAATCTTCCACAGGGCTTATATTCGCAAGATGACCTTCCCAAGATTGTTGCACGAACTTTAAATCAGGGAGCTCCAGTGAAGAGCATGGATTTTCATCCTTTGCAGCAGACCATACTTTTAGTCGGTACACATGTGGGTGAAATTGGTGTATGGGAAGTGGGTTCACAGGAAAGACTAGCTCACAGAAATTTCAAAGTTTGGGATCTTGGATCTTGTTCAGCTTCCATGCAGGCAGCAGTTCTCAAGGATCCTCTTGTATCAGTCAATCGTGTTGTGTGGAATCCAGATGGTTCTTTGTTTGGAGTAGCTTATTCAAAGCACATAGTGCACATATATTCCTTCCATGTTGGTAATGACTTACGGCAACACTTGGAGATTGACGCCCATGTTGGAGGTGTAAATGACCTTGCTTTTTCACATCCCAACAAGCAATTGTGTATTATTACCTGTGGAGATGACAAAACAATAAAGGTATGGGATGCTGTTACTGGTGTGAAGCAATATACTTTTGAAGGTCATGAAGCACCCGTGTATTCTGTATGCCCCCATTATAAAGAAAATATTCAGTTTATTTTTTCGACGGCTATTGATGGCAAGATAAAGGCTTGGTTATATGATCTGATGGGTTCAAGGGTTGATTATGATGCTCCTGGTCAGTGGTGCACTACAATGGCTTATAGTGCTGATGGGACAAGGCTCTTCTCATGTGGAACAAGCAAAGAAAGAGAATCTTTTCTTGTTGAATGGAATGAGAGTGAAGGTGCTATAAAGCGTACTTATCAAGGATTTTGTAAGCGCTCTTTGGATATTGTGCAGTTTGATACGACTAAGAACCGCTTTTTGGCTGCTGGAGATGAATATTTGATCAAGTTTTGGGACATGGACAACACAGCCCTGCTGACAACTGTTGATGCTGACGGTGGATTAGCTAATACTCCTCGTCTTCGCTTCAACAAGGAAGGGTCGTTATTGGCAGTTTCAACCAGTGATAATGGCATCAAAATTTTAGTCAATGCTGATGGCCACAGATTATTACGCTCATTTGAGAACCGTGCCTTTGATGCAGCAAGAGTTCCTTCTGATACGAAGGTGTCAGTAGTAACTCAAATGGCATCTGTAAGCACACCTGGGGCACAAACTGTTGGGGGATCTGATCGGGTTGCTTCCACAGTTTCCATGGCTGGACTGAATGGAGTGGATTCTAGGAGTGTTGGAGATAAGGTCAGAGTGGCAGAAGATTCAGTAGATAAAAACAAGAACTGGAAGCTAACTGAAATATCCGAACCAGCTCAGTGCCGGTCCTTGAGACTCTCAGATAACCTACCAACAAGCAAGATTTCAAGATTAATATATACTAATTCAGGAGTTGCGATTCTGGCATTGGCTTCCAATGCTGTGCACAAGCTCTGGAAATGGCAGCGAAATGATCGCAATGCTAGTGGCATGGCAGCAACCAGTATTCCACCTCAGTTATGGCAACCTGCCAGTGGCATACTGATGACAAATGACATAAGTGATACTAATCCCGAGGATGCTGTTCCCTGCTTTGCATTATCTAAAAATGACTCGTATGTTATGTCAGCCAGTGGTGGAAAAGTTTCTTTGTTCAATATGATGACATTCAAGACAATGACAACTTTCATGGCACCACCACCACCAGCAACTTTTCTTGCTTTCCACCCGCAGGACAACAACATAATTGCTATTGGCATGGAAGACTCTACAATTCAAATTTACAATGTTCGAGTGGATGAGGTAAAGAGCAAGCTTAAAGGACATCAAAAGAGAGTGACTGGGCTTGCTTTTTCTCATGCACTGAATGTGCTTGTATCATCAGGAGCAGATGCTCAGCTTTGCGTATGGGGAACCGATGGCTGGGAAAGGCTTAGGAATAAGTTTTTACAGCTACCAGCAGGCAGATCGCCACCACAGGCAGAAACTCGAGTGCAATTTCACCAGGATCAGATACACTTTTTGGTTGTGCATGAAACTCAAATCGCTATTTATGAAGCTAATAAACTTGAGTGTCTCAAACAGTGGATCCCCACGGAGTCACTTTCTGCTCCAATATCCCATGCTACTTACTCATGTGATAGTCAACTAATATATGCTAGCTTTTTTGATGGTGCGGTGGGTGTATTCCATGCTGGATCACTGCGGTTACGATGTCGAATTAGTCCATCATCGTATCTTTCACCTAGTGTCAGCTCTGGTGTGTACCCGCTTGTAATTGCAGCTCATCCTTCTGAGCCAAATCAATTTGCATTGGGATTGTCTGATGGGGGTGTACATGTTTTGGAGCCTTTAGAGTCGGAAGGAAAGTGGGGTACTGGACCACCTGTGGAAAATGGGTTGGCAAGCAATGCTTCTACTGTTCTTACAACTGGAACTTCAGGTTTAGAGCAAGCTCCAAGGTGA___TTTGTTTCTATCGAATATTTGCATATTTGCACTGAACCCCAACTCCTAGCTCTTACGTGGTGATCACATGTTTTAATGTGGGTCCCCCATTTATTGTGTAGCCTTTGAGCTATGACGTTGAGTGCCTTTTGTATTCAAGGTTTACATTGCATACTGTGATGCCAACTTGCACCAATGCTAGTGGCTCCATGTCTTTCTTAATGCATGAGTTAAGCTGTCTATATGAAGTCATTGCTGGAAATCCCTTCTGGGTATCGATAGTCAAGATCGGTGGCTCATGTTTAGTTTGAAAATGTATTTGTTGTTTTAAAAATTGTTAGGTGTATCACTAAGCAAGGGATCACACACACTGCTTTCCATAAAAAATTGTAGGCTTGTGAGGTTTAAAGAGTTGTGTCTTCCAGGTTTCAATGTGAAAAGAAACTTGATCGATTTGTTTACGGATTATTATTTTGTAAGATTCCGGCAATTTTGGAGCTGAGGTTTCCACTTTGAAATATTCAAATCAGATAAATGAATTAAACCAACTAATGGGTCTGCTGACTATTATAATACTCTGTTATATCTTATTATATTTACATGCCATATCGAAGGTGAATGCTTTATTTATCAAGATAAGCATTAGGGTATGCTAACCATCTTACTAGCTTCCACATGGTGGATGTTACTTGC

Fln Alignment:

sp_v1.1_unigene31427___MANATPAPHPAVSAGPIGLSAAANTAALLKRPRTPPNPPLGDYQSADSDHILKRARTIGQSGDEVSYSGPNLPQGLYSQDDLPKIVARTLNQGAPVKSMDFHPLQQTILLVGTHVGEIGVWEVGSQERLAHRNFKVWDLGSCSASMQ
D5AAF2_______________MDNATPAPHPAVSAGPIGLGAAANPAALLKRPRTPPNAPLGDYQSADSDHIRKRARTIGQSGDEVSYPGPNLPQGLYSQDDLPKTVQRTLHHGSPVMNMDFHPLQQTILLVGTHVGEIGVWEVGSQERLAHRNFKVWDLGSCSAPMQ

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
451		85		14	0.993533
1077	11	88			0.923564
1085			14	85	0.993533
1086		85	14		0.993533
1087			14	85	0.993533
1571	14		85		0.993533
1645	83		16		0.999991
1886	88		11		0.999937
1961	11		88		0.999952
1988	13	86			0.999973
2041		60		40	1.0
2054			60	40	1.0
2062	60		40		1.0
2068	60		40		1.0
2069		80		20	0.995493
2070	80	20			0.995493
2073	80			20	0.995493
2084		20		80	0.995493
2086		80		20	0.995493
2087	20	80			0.995493
2111	80			20	0.995493
2117			20	80	0.995493
2121	80		20		0.995498
2130	20		80		0.995493
2133		20		80	0.995493
2136		20		80	0.995493
2177		20		80	0.995493
2212		83		16	0.994512
2357		12		87	0.992554
2438	11	88			0.991528
2512	85		14		0.993533
2516	12			87	0.992554
2517		87		12	0.992554
2518	87			12	0.992554
2519		87	12		0.992554
2520		87	12		0.992554
2521	87		12		0.992554
2535		12		75	0.975346
2682		60		10	1.0
2683		40		60	1.0
2796	20	80			0.999999
2798			10	90	0.90298
2799	10		90		0.90298
2800			10	90	0.90298
3103	5		94		0.986407
3230			94	5	0.998397
3232		97		2	0.967801
3498	14			85	0.993533
3499	14	85			0.993533
3515	80			20	0.995493
3517	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain