SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31413

Length: 428 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene31413
CGTCGTGACCTTGGCTGTCACTCAAATTTTTTGTACATTACAAGTTCTGTAATTACAGATGCTGCTCACGTGGATCAGAGCTTATCTAGAATAGGAGACATGCACTGTTCCTGCTCTGGCAACTGTCTCTTGTCATCAACACCTTGCAAGTGTACTGGTGATACGCGGGGTGAATATGCCTATGATAACAATGGCCTTCTCATTCCACGACTAGCTTATAATTATTGCTCTATGGATGGGAGGAAGAATCGAACGGACTTTATTACTGAGTGCAATGTATCTTGCCCTTGTGATTTTTTGAAATGTGGCAATAGAGTTGTACAAAGGGGATTGAAGTACAGACTACAGGTTTTTATGACAAAGGAAGGCAAGGGTTGGGGTGTTCGTAGTTTAGAACCTATAGCAGCACGATCATTTTTGTTTGAATA

Ace file of the UniGene sp_v1.1_unigene31413

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SUVR4; histone-lysine N-methyltransferase n=1 Tax=Arabidopsis thaliana RepID=UPI000034F02E	-	-	8.0e-23	37%
FL-Next	sp=Histone-lysine N-methyltransferase SUVR4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	37%
Blast2go	set domain	-	-	1.40959e-23	52%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	1.40959e-23	52%

Source	KEGGs	Term	e value	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.40959e-23	52%
Blast2go	Tetracycline biosynthesis	00253	1.40959e-23	52%
Blast2go	Histidine metabolism	00340	1.40959e-23	52%
Blast2go	Tyrosine metabolism	00350	1.40959e-23	52%
Blast2go	Phenylalanine metabolism	00360	1.40959e-23	52%
Blast2go	Tryptophan metabolism	00380	1.40959e-23	52%
Blast2go	Benzoxazinoid biosynthesis	00402	1.40959e-23	52%
Blast2go	Selenocompound metabolism	00450	1.40959e-23	52%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	1.40959e-23	52%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	1.40959e-23	52%
Blast2go	Methane metabolism	00680	1.40959e-23	52%
Blast2go	Porphyrin and chlorophyll metabolism	00860	1.40959e-23	52%
Blast2go	Carotenoid biosynthesis	00906	1.40959e-23	52%
Blast2go	Phenylpropanoid biosynthesis	00940	1.40959e-23	52%
Blast2go	Flavonoid biosynthesis	00941	1.40959e-23	52%
Blast2go	Anthocyanin biosynthesis	00942	1.40959e-23	52%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	1.40959e-23	52%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	1.40959e-23	52%
Blast2go	Insect hormone biosynthesis	00981	1.40959e-23	52%
Blast2go	Biosynthesis of type II polyketide products	01057	1.40959e-23	52%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.40959e-23	52%
Blast2go	Metabolic pathways	01100	1.40959e-23	52%
Blast2go	Biosynthesis of secondary metabolites	01110	1.40959e-23	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	1.40959e-23	52%
Blast2go	nucleus	GO:0005634	Cellular Component	1.40959e-23	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pre-SET domain	IPR007728	-	1.40959e-23	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8W595

Fln msg: Distance to subject end: 160 aas, your sequence is shorter than subject: 142 - 492

Fln protein: RRDLGCHSNFLYITSSVITDAAHVDQSLSRIGDMHCSCSGNCLLSSTPCKCTGDTRGEYAYDNNGLLIPRLAYNYCSMDGRKNRTDFITECNVSCPCDFLKCGNRVVQRGLKYRLQVFMTKEGKGWGVRSLEPIAARSFLFE

Protein Length: 143

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTTTGTACATTACAAGTTCTGTAATTACAGATGCTGCTCACGTGGATCAGAGCTTATCTAGAATAGGAGACATGCACTGTTCCTGCTCTGGCAACTGTCTCTTGTCATCAACACCTTGCAAGTGTACTGGTGATACGCGGGGTGAATATGCCTATGATAACAATGGCCTTCTCATTCCACGACTAGCTTATAATTATTGCTCTATGGATGGGAGGAAGAATCGAACGGACTTTATTACTGAGTGCAATGTATCTTGCCCTTGTGATTTTTTGAAATGTGGCAATAGAGTTGTACAAAGGGGATTGAAGTACAGACTACAGGTTTTTATGACAAAGGAAGGCAAGGGTTGGGGTGTTCGTAGTTTAGAACCTATAGCAGCACGATCATTTTTGTTTGAATA

Fln Alignment:

sp_v1.1_unigene31413___FLYITSSVITDAAHVDQSLSRIGDMHC--SCSGNCLLSSTPCKCTGDTRGEYAYDNNGLL-----------------IPRLAYNYCSMD-----GRKNRTD------FITECNVSCPCDFLKCGNRVVQRGLKYRLQVFMTKEGKGWGVRSLEPIAARSFLFE
Q8W595_______________FTYIPHNIVYQSAYLHVSLARISDEDCCANCKGNCLSADFPCTCARETSGEYAYTKEGLLKEKFLDTCLKMKKEPDSFPKVYCKDCPLERDHDKGTYGKCDGHLIRKFIKECWRKCGCD-MQCGNRVVQRGIRCQLQVYFTQEGKGWGLRTLQDLPKGTFICE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
234	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain