SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31403

Length: 1117 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31403

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TSM0_PHYPA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	bah-phd domain-containing protein	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Bromo adjacent homology (BAH) domain	IPR001025	-	0.0	76%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADA3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 37 aas, putative chimeric sequence, your sequence is shorter than subject: 177 - 214

Fln protein: MVKSVMAKVPLQCCTLKSNGKVIKVGDSVLMRAQHRNQPPYVARVEKIESGPRKNMKVRVRWYYRPEDSKGGRRQFHGAKELFLSDHYDTQSVDTIEDTCVVHSFNNYSKLESVTSKDYFCRFEYMATTGAFNPQRVPVYCTCEMPYNPDDLMVQCEACKQCARQSDKGGELPCSN*

Protein Length: 178

Fln nts: ATGGGGTGATCTCATGTGAAGGACAGTGAAAATTATCCCTGCAATAGGCCAAGAAGCTGTGTTTCAGAGTGTTTAGGGCTTTCGGAGGCTGGGGATCGAATCGCGCCA_-_ATGGTGAAGTCCGTGATGGCAAAGGTGCCGTTGCAATGCTGCACACTTAAAAGTAACGGAAAAGTCATTAAAGTGGGGGACTCAGTGCTGATGCGCGCTCAGCATCGGAACCAACCGCCTTACGTAGCCCGGGTGGAGAAGATTGAAAGCGGCCCGAGAAAGAATATGAAGGTTAGAGTCAGGTGGTACTATAGACCGGAGGACTCAAAAGGTGGGCGGCGCCAGTTCCATGGCGCCAAGGAGCTATTCCTGTCCGATCACTACGACACCCAGAGCGTGGATACCATTGAGGATACCTGCGTAGTCCACAGCTTCAATAATTATTCGAAACTCGAAAGCGTGACCTCCAAAGATTATTTTTGTCGCTTCGAATACATGGCCACCACTGGCGCCTTCAATCCACAACGGGTGCCTGTGTATTGCACTTGTGAAATGCCTTATAATCCCGATGATCTAATGGTGCAGTGTGAGGCATGCAAACAATGCGCAAGACAAAGCGACAAAGGAGGTGAATTACCATGTAGCAATTGA___TCCTTATGTTGGACAGGATTGGTATGATGAATGGGACTGAGATTGGCACATTGTTGAGACTAAAGTAACTGAATTTTCCTGAAGGTGTTATTGATTTTTTTGATGTCTACGTGTGTGTTGTCTGAGTAGTTTTAAGTTTGGTTTCTTGGCTAACACTGTGTTACAGTCACGTTTGGGAGCATATTTTCACTGGCGGGTACTAGGCTGTTGGTATTGTGTTTTGTTAACTATTAAATATGACCATTATTTTGAGATCCATCTATATCAATATCCATCAAGGTCTTTAGGATTCATAGTGGCATCAATTGTCAATATCTATTTAGGCCTTTAGGATTCAGAGGCATCAATTGCTTGTATGTTTTATATTGTCATTTAGGATATGTTATCCATGTAACTTGAATGGAATATTCCTTGGATTAACGTCAAGTTAAATTTTTTGTCATAATAAAAAGCCCAGTTCATGTGGTATCTACTGTTT

Fln Alignment:

sp_v1.1_unigene31403___MVKSVMAKVPLQCCTLKSNGKVIKVGDSVLMRAQHRNQPPYVARVEKIESGPRKNMKVRVRWYYRPEDSKGGRRQFHGAKELFLSDHYDTQSVDTIEDTCVVHSFNNYSKLESVTSKDYFCRFEYMATTGAFNPQRVPVYCTCEMPYNPDDLMVQCEACKQ
D5ADA3_______________MAKSGTAKEPLQCCTIRSNGKVVKVGDSVLMRAQDPDEPPYVAQVEKFERGARNNVKVRVRWYYRPEDSKAGRRQFHGAKELFLSDHYDTQSVNTIEDTCVVHSFKNYSNLESVASEDYFCRFEYTPITGYFNPDRVPVYCTCEMPYNPDDLMVQCEACKE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
331	14		85		0.993533
527		16		83	0.994512
595			40	60	1.0
759		87		12	0.99256
781			25	75	1.0
1076	75		25		0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain