SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31401

Length: 2242 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene31401
TCTTTGGTCCCGGCGGTTGCATCCCGTAAATTTTACTGGCAATAACGAGCGTTTCATATAGCTGAGAAACTCGTCTATTCTTTTACGAATAAAGGCGGCTGAGCTGTGGGTTTCTCCGGCTTCCACCTACTATAAAATGTCTTAATCGAGAATATTTTAGCAGAAGCTCTGAAAATGGCTTCAGCCGTCGGAATTATAAATAATGGCAGGGTTTGCCCCGGAAACCCCAGAGCAGTGTGTGTGTTGAGCCGGGATTCAAGCAGCCTGTGGAATGAGATTCTCAATGGACGAAGTGTCTGTGTCTCTGGTTGGAGGAATGCCTGGGCTGTGCCATCATCGGTGCCAGTTGTTTCTCTTGGTCGAATTGGTCGGAGTAACCTTACGGTGCCGCTGCTGACAGCCTCGCGGAGGATTTCAGCACCGTGGGATGTCTTTGGGAAGAAGGGCTCCTGCTTGGCTTGCAGCTGCGTACCTGATAATGGCAATCTGGGCATTGGGCTGCCTGGTTGTGACCAGGATCCGGAGCAGTTCGTTGGATGGTTCAGACAGGCGTGGCCTTACATACAAGGCCACCGGGGGAGCACGTTCGTTGTCGTGATTTCGGGCGAGATCATGGCAACTCCTCACATAGACTGCATTCTTCAGGATATTTCTCTCCTCCATGGTTTAGGAATCAAGTTTGTGATTGTTCCAGGAACACATGTTCAAATTGATCAACTTCTGCAGGAGAGAGGAAACAAGGCCAAATATGTTGGGCGGTATCGAATTACAGATCCTGAATCTTTAGAAGCAGCAATGGAGGCAGCTGGTAGAATCCGTCTTACAATAGAAGCCAAACTTTCTCCAGGGCCATCGATTCCAAGTCTTCGGCGACATGGTGACAATGACCGCTGGCATGATGTTGGAGTAAGTGTTGCCAGTGGGAACTTTCTGGCGGCTAAGCGTAGAGGAGTAGTTGGTGGAATTGATTATATGGCCACTGGAGAGGTAAAAAGAATTGATGTTTCTCGGATACGGGAGAGACTCGAAGCTAATTGTATTGTCATAGTGAGCAACTTAGGCTACTCCAGCACTGGGCAAGTTCTAAATTGCAACACATATGAGGTAGCTACTGCCTGTGCACTGGCTCTTCAAGCAGACAAACTCATTTGCTTGGTTGATGGTCCTATTCTAGATGAAAATGGAAGGTTAATTCGTTACATGACTCTTCCTGAAGCAGACCAACTTATACGGAAGCGAGCCGAGCAGAGTGAAATTGCCGCAAAATATGTGCAAGCTGTTGCTGGCACTACTAGTAATCACGTGGAATATTCTGGTGTGAATGGAAGAGATACTTCATTTCAACAAAACTTTGGTGCTAGGAAAGCGTTTGGTGCAACATTTCACAATGGTGTTGGCTTTGATAGTGGAAATGGACTTGGGGCTGGAGGACAGGGGTTTGCTATTGGTGGGGAAGAGAGGCTGGGCAGATTAAATGCATACCTTTCAGAACTAGCGGCGGCAGTCTTCGTGTGCAGAGGTGGTGTACAGAGGGTTCATCTCTTGGATGGTACTGTTGGTGGAGCTATATTATTAGAACTATTCACAAGGGATGGCATAGGTACCATGGTTGCAAGTGATGTGAATGACCAGCTCCATTTTCATGTAAAACACCCACAGGAAAGCAGAAGTCCATATTGACATAAAAATCATGAGCATAAAGTACAAGAATAATTAGAAACGGGACAGAAAAACACCAGATGGTGTAGTTATGGACAAGCTCGCATTGCCTATATTTTGAAGTGGCAAGATGTAAAAGGGTCTAATGAGGATTTTGAAATATGCAGCTCAAGTGAGGTAGGGATAGTCATTTTATAATTTAGATGTGCTGCCTGTGGCCATCCAAGAAGGGATAATGTCTTTAATGGGGAATGCTCATGCCACTGGACAACTTCTTGAAGAAAGAAGCAGTCCTATGATAAGAAATTCTTGGTGCAGGCAAATCCCTAAGGAGAAAAGAGGATGGGACCTTTCAAGCTTGGAAATGTGTGGCATAGGAGCTGTGGTTTTTCCACTTCCGTGCTAATTTCTATTTACTGTTTACATTTATTAGACAGTGTTTGAGTTATTGTGAAGTTTAATCTCGTCATTTCACCTTTAGGACCATTTGGCCTTGTGCATGTTAATTTAAATTATTCTTCAGACATTTGGCCTTGTGCATGTCAAAGAAATTTATTCTTATGTAATTTGGCCTTGTGCATGA

Ace file of the UniGene sp_v1.1_unigene31401 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein n=1 Tax=Vitis vinifera RepID=UPI0001983A51	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	gcn5-related n-acetyltransferase family protein amino acid kinase family protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNX1

Fln msg: your sequence is longer than subject: 502 - 352

Fln protein: MASAVGIINNGRVCPGNPRAVCVLSRDSSSLWNEILNGRSVCVSGWRNAWAVPSSVPVVSLGRIGRSNLTVPLLTASRRISAPWDVFGKKGSCLACSCVPDNGNLGIGLPGCDQDPEQFVGWFRQAWPYIQGHRGSTFVVVISGEIMATPHIDCILQDISLLHGLGIKFVIVPGTHVQIDQLLQERGNKAKYVGRYRITDPESLEAAMEAAGRIRLTIEAKLSPGPSIPSLRRHGDNDRWHDVGVSVASGNFLAAKRRGVVGGIDYMATGEVKRIDVSRIRERLEANCIVIVSNLGYSSTGQVLNCNTYEVATACALALQADKLICLVDGPILDENGRLIRYMTLPEADQLIRKRAEQSEIAAKYVQAVAGTTSNHVEYSGVNGRDTSFQQNFGARKAFGATFHNGVGFDSGNGLGAGGQGFAIGGEERLGRLNAYLSELAAAVFVCRGGVQRVHLLDGTVGGAILLELFTRDGIGTMVASDVNDQLHFHVKHPQESRSPY*

Protein Length: 503

Fln nts: TCTTTGGTCCCGGCGGTTGCATCCCGTAAATTTTACTGGCAATAACGAGCGTTTCATATAGCTGAGAAACTCGTCTATTCTTTTACGAATAAAGGCGGCTGAGCTGTGGGTTTCTCCGGCTTCCACCTACTATAAAATGTCTTAATCGAGAATATTTTAGCAGAAGCTCTGAAA_-_ATGGCTTCAGCCGTCGGAATTATAAATAATGGCAGGGTTTGCCCCGGAAACCCCAGAGCAGTGTGTGTGTTGAGCCGGGATTCAAGCAGCCTGTGGAATGAGATTCTCAATGGACGAAGTGTCTGTGTCTCTGGTTGGAGGAATGCCTGGGCTGTGCCATCATCGGTGCCAGTTGTTTCTCTTGGTCGAATTGGTCGGAGTAACCTTACGGTGCCGCTGCTGACAGCCTCGCGGAGGATTTCAGCACCGTGGGATGTCTTTGGGAAGAAGGGCTCCTGCTTGGCTTGCAGCTGCGTACCTGATAATGGCAATCTGGGCATTGGGCTGCCTGGTTGTGACCAGGATCCGGAGCAGTTCGTTGGATGGTTCAGACAGGCGTGGCCTTACATACAAGGCCACCGGGGGAGCACGTTCGTTGTCGTGATTTCGGGCGAGATCATGGCAACTCCTCACATAGACTGCATTCTTCAGGATATTTCTCTCCTCCATGGTTTAGGAATCAAGTTTGTGATTGTTCCAGGAACACATGTTCAAATTGATCAACTTCTGCAGGAGAGAGGAAACAAGGCCAAATATGTTGGGCGGTATCGAATTACAGATCCTGAATCTTTAGAAGCAGCAATGGAGGCAGCTGGTAGAATCCGTCTTACAATAGAAGCCAAACTTTCTCCAGGGCCATCGATTCCAAGTCTTCGGCGACATGGTGACAATGACCGCTGGCATGATGTTGGAGTAAGTGTTGCCAGTGGGAACTTTCTGGCGGCTAAGCGTAGAGGAGTAGTTGGTGGAATTGATTATATGGCCACTGGAGAGGTAAAAAGAATTGATGTTTCTCGGATACGGGAGAGACTCGAAGCTAATTGTATTGTCATAGTGAGCAACTTAGGCTACTCCAGCACTGGGCAAGTTCTAAATTGCAACACATATGAGGTAGCTACTGCCTGTGCACTGGCTCTTCAAGCAGACAAACTCATTTGCTTGGTTGATGGTCCTATTCTAGATGAAAATGGAAGGTTAATTCGTTACATGACTCTTCCTGAAGCAGACCAACTTATACGGAAGCGAGCCGAGCAGAGTGAAATTGCCGCAAAATATGTGCAAGCTGTTGCTGGCACTACTAGTAATCACGTGGAATATTCTGGTGTGAATGGAAGAGATACTTCATTTCAACAAAACTTTGGTGCTAGGAAAGCGTTTGGTGCAACATTTCACAATGGTGTTGGCTTTGATAGTGGAAATGGACTTGGGGCTGGAGGACAGGGGTTTGCTATTGGTGGGGAAGAGAGGCTGGGCAGATTAAATGCATACCTTTCAGAACTAGCGGCGGCAGTCTTCGTGTGCAGAGGTGGTGTACAGAGGGTTCATCTCTTGGATGGTACTGTTGGTGGAGCTATATTATTAGAACTATTCACAAGGGATGGCATAGGTACCATGGTTGCAAGTGATGTGAATGACCAGCTCCATTTTCATGTAAAACACCCACAGGAAAGCAGAAGTCCATATTGA___CATAAAAATCATGAGCATAAAGTACAAGAATAATTAGAAACGGGACAGAAAAACACCAGATGGTGTAGTTATGGACAAGCTCGCATTGCCTATATTTTGAAGTGGCAAGATGTAAAAGGGTCTAATGAGGATTTTGAAATATGCAGCTCAAGTGAGGTAGGGATAGTCATTTTATAATTTAGATGTGCTGCCTGTGGCCATCCAAGAAGGGATAATGTCTTTAATGGGGAATGCTCATGCCACTGGACAACTTCTTGAAGAAAGAAGCAGTCCTATGATAAGAAATTCTTGGTGCAGGCAAATCCCTAAGGAGAAAAGAGGATGGGACCTTTCAAGCTTGGAAATGTGTGGCATAGGAGCTGTGGTTTTTCCACTTCCGTGCTAATTTCTATTTACTGTTTACATTTATTAGACAGTGTTTGAGTTATTGTGAAGTTTAATCTCGTCATTTCACCTTTAGGACCATTTGGCCTTGTGCATGTTAATTTAAATTATTCTTCAGACATTTGGCCTTGTGCATGTCAAAGAAATTTATTCTTATGTAATTTGGCCTTGTGCATGA

Fln Alignment:

sp_v1.1_unigene31401___QAWPYIQGHRGSTFVVVISGEIMATPHI-DCILQDISLLHGLGIKFVIVPGTHVQIDQLLQERGNKAKYVGRYRITDPESLEAA-MEAAGRIRLTIEAKLSPGPSIPSLRRHGDNDRWHDVGVSVASGNFLAAKRRGVVGGIDYMATGEVKRIDVSRIRERLEANCIVIVSNLGYSSTGQVLNCNTYEVATACALALQADKLICLVD--GPILDENG--RLIRYMTLPEADQLIRK
B8LNX1_______________EALPFIQKFQGKTVVVKYGGAAMKDENLKDGVIKDLVLLSCVGLRPVFVHGGGPEINEWLGKVGIKPQFKNGLRVTDAATMEVVEMVLVGKVNKSL---------VSLINRAGGNA----VGLCGKDGKLITARPQGV----DLGFVGEVASINTSILKAIVENGSIPVIASVAADENGQAYNINADTAAGEIAASLGAEKLILLTDVAGLLLDRENPESLVKEVDMKGVKKLVQQ

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
422		16		83	0.994512
473		16		83	0.994517
475			16	83	0.994512
478			83	16	0.994512
479		80	20		0.995493
481	80	20			0.995493
482	20			80	0.995493
485		20	80		0.995493
489	20			80	0.995493
490			20	80	0.995493
496		20		80	0.995493
497	80		20		0.995493
500			20	80	0.995493
516		50		50	1.0
518		25		75	0.996474
582			75	25	0.996473
1237		20		80	0.995493
1431	80		20		0.995493
1705		16		83	0.994512
1744		80	20		0.995499
1948			88	11	0.999952
2136		80		20	0.995493
2170		20		80	0.995497
2171	75	25			0.996473
2172	75	25			0.996473
2174	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain