SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31377

Length: 565 nt

UniGene Fasta

>sp_v1.1_unigene31377
TGCAGAGCGTATTATGGACAAAGGAGTAAGTGTGCGGAAGCGTGTAATAAAGATTATTCGAGAGGTGTGTGTTTCTAAATGTGAATTTGCAAAAACCACGGACGCATGTTACCACATTATTTCGAGAATCGATGATGAAGAATCAAGTATACAGGATCTGGTGTGCAAGACATTCTATGAGTTATGGTTTGAAGAACCTTCAAATGTACAAGCTGAGTTTTTTGGTGATGGAAGTATTGTGCCACTAGAAATAGCAGAACGGACACAGCAATTAGTCAATGTGTTAGCTATGCTGAACAACCATCAACCATTAGTTACTATCATCAAACGTACTTTGGCTTTGGATTTCTGTCCTAGGAGCACTGGAACAAGTGTGGTGTTACAAGCATCTGTCCGAATCGGTGTGAATTGATGTGCAAATGTTTGCTGGAAAGTATTCTGAAGGTGGAAGAATCAAATAGCTTGGAATCTGAAACTCGTGCACTTCCGTATGTGTTGGCTTTGCATGCATTTTGCACTGTGGATCCAACCTTGTGCACACCAGCATCTGATCCATCACGATTTG

Ace file of the UniGene sp_v1.1_unigene31377

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EMB2773 (EMBRYO DEFECTIVE 2773); binding / protein binding / zinc ion binding; K06672 cohesin loading factor subunit SCC2	-	-	51%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	62%
Blast2go	sister chromatid cohesion 2	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	centromere complex assembly	GO:0034508	Biological Process	71%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	71%
Blast2go	meiotic sister chromatid cohesion	GO:0051177	Biological Process	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IK65

Fln msg: Separated hits, possible frame ERROR between 397 and 400, Distance to subject end: 709 aas, your sequence is shorter than subject: 188 - 1815

Fln protein: AERIMDKGVSVRKRVIKIIREVCVSKCEFAKTTDACYHIISRIDDEESSIQDLVCKTFYELWFEEPSNVQAEFFGDGSIVPLEIAERTQQLVNVLAMLNNHQPLVTIIKRTLALDFCPRSTGTSVVLQASVxxRCELMCKCLLESILKVEESNSLESETRALPYVLALHAFCTVDPTLCTPASDPSRF

Protein Length: 189

Fln nts: TGCAGAGCGTATTATGGACAAAGGAGTAAGTGTGCGGAAGCGTGTAATAAAGATTATTCGAGAGGTGTGTGTTTCTAAATGTGAATTTGCAAAAACCACGGACGCATGTTACCACATTATTTCGAGAATCGATGATGAAGAATCAAGTATACAGGATCTGGTGTGCAAGACATTCTATGAGTTATGGTTTGAAGAACCTTCAAATGTACAAGCTGAGTTTTTTGGTGATGGAAGTATTGTGCCACTAGAAATAGCAGAACGGACACAGCAATTAGTCAATGTGTTAGCTATGCTGAACAACCATCAACCATTAGTTACTATCATCAAACGTACTTTGGCTTTGGATTTCTGTCCTAGGAGCACTGGAACAAGTGTGGTGTTACAAGCATCTGTCCGxxxTCGGTGTGAATTGATGTGCAAATGTTTGCTGGAAAGTATTCTGAAGGTGGAAGAATCAAATAGCTTGGAATCTGAAACTCGTGCACTTCCGTATGTGTTGGCTTTGCATGCATTTTGCACTGTGGATCCAACCTTGTGCACACCAGCATCTGATCCATCACGATTTG

Fln Alignment:

sp_v1.1_unigene31377___AERIMDKGVSVRKRVIKIIREVCVSKCEFAKTTDACYHXXXXXXXXXXXXQDLVCKTFYELWFEEPSNVQAEFFGDGSIVPLEIAERTQQLVNVLAMLNNHQPLVTIIKRTLALDFCPRS---TGTSVVLQASVRxRCELMCKCLLESILKVEESNSLESETRALPYVLALHAFCTVDPTLCTPASDPSRF
B9IK65_______________AERIKDTGVSVRKRAIKIIRDMCISNPNFTQFTTACIEIISRVSDDESSIQDLVCKTFYEFWFEEPSGLRTQFFGDGSSVPLEVAKKTEQIVEMLRRMPSHQLLVTVIKRNLALDFFPQSAKAVGINPVSLASVRxRCELMCKCLLERILQVEEMNSDEVELCTLPYVLALHAFCVVDPTLCAPASDPSQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain