SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31348

Length: 548 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene31348
CGTCGTGACCTTGGCTGTCACTCAAATGTTGATATGATACTGGACAAAGTCATGTCAGCCAAAGAGTTGACAGGGGGTCACTTTATCGAGGCTTGTTGCTTCCTTCAATTCTATGGTGCATTTCAAGGCCCATTTCCATTAAACCCAAAGGATGAAATTGAGACGCTTTTCTCATCAGTTGGGGAAGAGGTGAAGGTGATTTGTTCTGTAGCAGATGATTTACGATCTAGGATAAATGGAGAAAAGGTAACATATGTTGTGAATCGAAATATCAACTATACAAATATATGCAGTTATAGTTGTGCATTTTGCGCTTTCAGTAAGGGCCAATCCAGTGATAACTTGCGTGGAAAGCCATACCAGATGTCACTAGAGGAAATATCTCAAAGAACAATTGAAGCCTGGGATAGGGGAGCAACTGAGATTTGTATGCAGGGAGGTATCCATCCAGCATACTCTGGGAAGACATATCTGGATATTCTGCATGCTGTGAAGAGCGTTGTTCCTCAAATTCATGTTCATGCATTTTCACCCTTGGAGGTTTTTCA

Ace file of the UniGene sp_v1.1_unigene31348

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	fbiC; FO synthase; K11779 FO synthase [EC:2.5.1.-]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	71%
Blast2go	didemethyl-8-hydroxy-5-deazariboflavin subunit	-	-	78%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Transferring alkyl or aryl groups, other than methyl groups, Transferring alkyl or aryl groups, other than methyl groups.	EC:2.5.1.-	-	0.0	65%

Source	KEGGs	Term	Identity
AutoFact	Ubiquinone and other terpenoid-quinone biosynthesis	00130	65%
AutoFact	Cysteine and methionine metabolism	00270	65%
AutoFact	Tryptophan metabolism	00380	65%
AutoFact	Porphyrin and chlorophyll metabolism	00860	65%
AutoFact	Terpenoid backbone biosynthesis	00900	65%
AutoFact	Carotenoid biosynthesis	00906	65%
AutoFact	Biosynthesis of terpenoids and steroids	01062	65%
AutoFact	Metabolic pathways	01100	65%
AutoFact	Biosynthesis of secondary metabolites	01110	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Radical SAM	IPR007197	-	0.0	78%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RY80

Fln msg: Distance to subject end: 181 aas, your sequence is shorter than subject: 182 - 760

Fln protein: RRDLGCHSNVDMILDKVMSAKELTGGHFIEACCFLQFYGAFQGPFPLNPKDEIETLFSSVGEEVKVICSVADDLRSRINGEKVTYVVNRNINYTNICSYSCAFCAFSKGQSSDNLRGKPYQMSLEEISQRTIEAWDRGATEICMQGGIHPAYSGKTYLDILHAVKSVVPQIHVHAFSPLEVF

Protein Length: 183

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGTTGATATGATACTGGACAAAGTCATGTCAGCCAAAGAGTTGACAGGGGGTCACTTTATCGAGGCTTGTTGCTTCCTTCAATTCTATGGTGCATTTCAAGGCCCATTTCCATTAAACCCAAAGGATGAAATTGAGACGCTTTTCTCATCAGTTGGGGAAGAGGTGAAGGTGATTTGTTCTGTAGCAGATGATTTACGATCTAGGATAAATGGAGAAAAGGTAACATATGTTGTGAATCGAAATATCAACTATACAAATATATGCAGTTATAGTTGTGCATTTTGCGCTTTCAGTAAGGGCCAATCCAGTGATAACTTGCGTGGAAAGCCATACCAGATGTCACTAGAGGAAATATCTCAAAGAACAATTGAAGCCTGGGATAGGGGAGCAACTGAGATTTGTATGCAGGGAGGTATCCATCCAGCATACTCTGGGAAGACATATCTGGATATTCTGCATGCTGTGAAGAGCGTTGTTCCTCAAATTCATGTTCATGCATTTTCACCCTTGGAGGTTTTTCA

Fln Alignment:

sp_v1.1_unigene31348___KDEIETLFSSVGEEVKVICSVADDLRSRINGEKVTYVVNRNINYTNICSYSCAFCAFSKGQSSDNLRGKPYQMSLEEISQRTIEAWDRGATEICMQGGIHPAYSGKTYLDILHAVKSVVPQIHVHAFSPLEVF
D8RY80_______________RDEITMLFYSMGPDFDYICSSANRLRESVNGNKVTYVVNRNINYTNVCSYKCQFCAFSKGKQNENLRGKPYSLSLEEISRRTIEARERGATEVCMQGGIHPDYTGETYLEILKAVKSAVPGIHVHAFSPLEVY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
154			66	33	0.997453
156	66	33			0.997458
160			33	66	0.997453
338		20		80	0.995493
369		20		80	0.995493
370		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain