SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31336

Length: 887 nt

Origin of reads: Biogeco_1 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene31336 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rve domain containing protein	-	-	5.0e-26	39%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	42%
Blast2go	hypothetical protein VITISV_037667 [Vitis vinifera]	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Integrase, catalytic core	IPR001584	-	0.0	65%
Blast2go	Ribonuclease H-like domain	IPR012337	-	0.0	65%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
196		66	33		0.997452
453	33			66	0.997452
454		33		66	0.997453
460		33		66	0.997476
475	66		33		0.997452
476	33	66			0.997453
477			33	66	0.997452
479	33		66		0.997452
480	33		66		0.997452
481		33		66	0.997452
484	66	33			0.997452
487	33			66	0.997452
488	66		33		0.997452
493		33	66		0.997452
494			33	66	0.997452
497	66		33		0.997452
587	33		66		0.997452
594		33		66	0.997456
600	66	33			0.997452
603		33		66	0.997461
667			66	33	0.997452
678	33		66		0.997452
680			66	33	0.997452
683	66			33	0.997452
699		33		66	0.997452
718	66		33		0.997453
719			66	33	0.997452
730			66	33	0.997452
735	33	66			0.997452
736	33		33		0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain