SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31329

Length: 901 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31329

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RDW3_RICCO	-	-	1.0e-33	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	udp-glucoronosyl udp-glucosyl transferase family protein	-	-	0.0	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKI0

Fln msg: Separated hits, possible frame ERROR between 485 and 505, your sequence is shorter than subject: 230 - 476

Fln protein: DVTSVPVLSVGPLMPVVQPVARGSKGSYLLEWLDQQREASVVFVSFGSETFLLREQVRELALGLEASGLLFLWSLRSPEADPLGLLPEGFQTRTRDMGIITGEWVPQVRIVSHPAVGGYLCHAGWSSAMEALSFGVPLILLPIKFDQFLNARQIAAELKAxxxxxxxxDDGSFLKENVCETVRMVMVGEEGKHLRLKAAEARDILVGNNGRQQSYIDDFVQRIEQLRGK*

Protein Length: 231

Fln nts: AGGACGTTACCAGTGTCCCGGTGCTTTCTGTCGGCCCACTTATGCCAGTTGTTCAGCCCGTTGCCAGGGGCAGCAAGGGCTCGTATCTGCTGGAATGGCTGGACCAGCAGAGGGAGGCGTCCGTCGTGTTTGTGTCGTTCGGCAGCGAGACGTTTCTGTTGAGAGAACAAGTCCGCGAGCTGGCGCTGGGGTTGGAAGCGAGCGGTCTGCTGTTTCTGTGGTCTTTGCGTTCTCCAGAGGCCGACCCGTTGGGGCTCCTTCCAGAGGGATTCCAGACTCGAACTCGGGACATGGGGATTATCACTGGGGAATGGGTGCCGCAGGTGCGGATCGTCTCGCACCCGGCAGTAGGCGGGTATCTGTGCCACGCCGGCTGGAGTTCCGCCATGGAGGCGCTGAGCTTTGGAGTGCCCCTCATACTTCTGCCCATTAAGTTTGATCAGTTTTTGAACGCGCGGCAAATAGCGGCGGAATTGAAAGCGGGxxxxxxxxxxxxxxxxxxxxxAGACGATGGCTCTTTTCTGAAGGAAAATGTCTGCGAGACTGTGAGAATGGTTATGGTGGGGGAGGAGGGGAAACATTTGAGATTGAAGGCGGCAGAGGCCCGTGACATTCTAGTGGGCAATAATGGGCGCCAGCAGAGCTACATCGATGACTTTGTTCAACGGATCGAACAGTTACGAGGAAAGTAAAATGTCGAAGCGGCCAAAAGATTTGGCACTGAGATGCCTTTGGATTGTTTGACATGTATTGGTCGATTAAGACATGGGTAAGTGAATTTTTCTTTTAAGTCAAAGTAAAATTGATAGTATTGGTCAATAATTTCGAAGATGTCCGAAATCATATCTGTATAGAATTAATATTCTCTTGTAAAATATTAATTAATGTTGAAGTAATTTGGAC

Fln Alignment:

sp_v1.1_unigene31329___DVTSVPVLSVGPLMPVVQPVA--RGSKGSYLLEWLDQQREASVVFVSFGSETFLLREQVRXXXXXXXXXXXXXXWSLRSPEA-----DPLGLLPEGFQTRTRDMGIITGEWVPQVRIVSHPAVGGYLCHAGWSSAMEALSFGVPLILLPIKFDQFLNARQIAAELKAGxxxxxxxDDGSFLKENVCETVRMVMVGEEGKHLRLKAAEARDILVGNNGRQQSYIDDFVQRIEQL
B8LKI0_______________DALGVPVLSVGPLTPAVLPGASGNGSDHSDLLEWLDRQREASVVFVSFGSEAFLSEDQIHELALGLEASGLPFLWSIRFPRYSDGGHDPLGVFPEGFQIRTQDRGLVVEGWVPQVQILSHRSIGGFLSHGGWSSAMESLSFGIPLIVLPIQLDQGLNARQIAAELKAGxxxxxxxEDGSFLRENICTTLTMAMAGEEGEKLRSKAAEARDIIAAN---KQSHIHDFIQKLEQL

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
308		33	66		0.997452
310	33		33	33	0.997753
313	66	33			0.997452
314		33		66	0.997452
315			66	33	0.997452
316			66	33	0.997452
321		66		33	0.997452
327		33	66		0.997476
331	33		66		0.997452
366	33			66	0.997452
412		50	50		1.0
427		50	50		1.0
448			25	75	0.996474
453			75	25	0.996473
487		50	50		1.0
490			50	50	1.0
505	25		75		0.996473
507	50	50			1.0
538		66		33	0.997452
540		33	66		0.997452
542		33	66		0.997452
544	33		66		0.997452
547			33	66	0.997452
591		33		66	0.999998
595	33		66		0.997452
606		33		66	0.99993
611		33	66		0.999965
613		33		66	0.999983
645		33	66		0.999956
656		33	66		0.999965
665		33	66		0.999998

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain