SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31313

Length: 1384 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31313

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rab family GTPase n=1 Tax=Selaginella moellendorffii RepID=D8RRT7_SELML	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	rab7 -family small gtpase	-	-	92%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	92%
Blast2go	Ran GTPase	IPR002041	-	92%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	92%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	92%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	92%
Blast2go	Small GTP-binding protein domain	IPR005225	-	92%
Blast2go	Ras	IPR013753	-	92%
Blast2go	Small GTPase	IPR020851	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN24

Fln msg:

Fln protein: MATRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQVEDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVIKSFDNLDNWRQEFLIQANPNDPDNFPFVVLGNKTDVDGGHSRVVSEKKAKMWCAAKGNIPYFETSAKEDMNVEEAFQCIAKNALKNEPDEEIYLPETIDVGHIGVQRPSACQC*

Protein Length: 208

Fln nts: ATGGGGATCTGTATCGGGAAACCGTCTGAGTAGATTTGAAATATACATAACGTCGTGACCTTGGCTGTCACTCAATCTTCTGACCATCTTCTCGATTTCCCTGAAGAATTGACAATTGGGTATGTAGATACTGGTCTGAAATTGAAGGAAGCTTGGGATT_-_ATGGCGACTCGGAAACGGACATTGCTGAAGGTCATCATTCTGGGCGATAGCGGGGTGGGGAAAACATCACTAATGAATCAATATGTGAATAAGAAATTCAGCAACCAATACAAGGCAACAATTGGAGCAGATTTCCTGACCAAAGAAGTGCAAGTGGAAGACAGACTTGTGACAATGCAGATCTGGGATACAGCTGGGCAGGAGCGTTTTCAGAGTTTAGGTGTTGCCTTTTATCGGGGTGCAGACTGTTGTGTCCTTGTATATGATGTGAATGTTATAAAATCATTTGATAATCTGGACAACTGGCGCCAGGAATTCCTTATCCAGGCAAATCCTAATGATCCAGATAATTTCCCATTTGTGGTATTGGGAAATAAAACTGATGTCGATGGTGGTCATAGCAGAGTAGTGTCTGAGAAGAAGGCAAAGATGTGGTGTGCAGCCAAAGGAAACATTCCATATTTTGAAACATCAGCTAAAGAGGACATGAATGTGGAGGAAGCTTTTCAGTGCATTGCTAAGAATGCATTAAAAAATGAGCCAGATGAGGAAATTTATCTGCCAGAAACTATAGATGTGGGTCACATTGGTGTACAGAGGCCATCTGCATGCCAGTGTTGA___AGATCCATGAGTAAATGAGGTAAATATGGACAAGGTCTGTATGCAGAATATATTTTATCTATATGGAGTATAGTGAGCATTGGGAATTCTATTTAGTCCATTAATTTGGGTGTTGACATAAATGTGCTATATTTTGACATTTGCTGTCAGACTTACTAGCATTTTGATTTTGGTTTAAGTGCCAGATAATTTTTACATGTCTAGCTCGTTGGTAACAATGGTATTATTCTTGTACCAGAATGTGAAATTTTTGGTAATTCTTGATTCAAGAATCAGATTGGAGAAACTTATATATGGTTTGGAATATTCATTAGAATGGGACCTATGCACTAAGATTGAATATTCCCTTTTAAGAGAGTTAAGGGATGCCTACTGTAAGTTTCTTGTGGTGAGCTAAAACAAAGTCGTAATTGCAGTCTTCAGAAAAGGTTGTATCAATCCGGACTTAACCAGACAGCTCAAAATTGTCTGAATTAGCTTGTGTTTATTCATGCTCTCTGTATTCATATTTTCCAATGCATTATATATGCTCTCTTGTAATAGCTACCCTGCTTTCACTTGGATACTGTTCGCTGTTAATGCTTGAAATTTAATATAAATTTC

Fln Alignment:

sp_v1.1_unigene31313___MATRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQVEDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVIKSFDNLDNWRQEFLIQANPNDPDNFPFVVLGNKTDVDGGHSRVVSEKKAKMWCAAKGNIPYFETSAKEDMNVEEAFQCIAKNALKNEPDEEIYLPETIDVGHIGVQRPSACQC
A9NN24_______________MATRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQVEDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVIKSFDNLDNWRQEFLIQANPTDPENFPFVVLGNKTDVDGGHSRVVSEKKAKMWCAAKGNIPYFETSAKEDMNVEEAFQCIAKNALKNEPDEEIYLPETIDVGHVGVQRPSACQC

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
917	33	66			0.999999
922	33		66		0.999999
925	33	66			0.999999
926	33			66	0.999999
941		16		83	0.994512
946	83			16	0.994512
954	83		16		0.994512
957	83		16		0.994512
958			83	16	0.994512
975	33		66		1.0
985		88	11		0.991528
986	88			11	0.991528
987		11	88		0.991528
988	88		11		0.991528
989	22			77	0.999999
990	88		11		0.991528
992		11		88	0.991528
993		11		88	0.991528
996			11	88	0.923564
997	88		11		0.991528
1254	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain