SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31308

Length: 1524 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene31308 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylpropenal double-bond reductase n=1 Tax=Pinus taeda RepID=Q0PIN2_PINTA	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	nadp-dependent oxidoreductase p2	-	-	73%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	73%
Blast2go	GroES-like	IPR011032	-	73%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	73%
Blast2go	NAD(P)-binding domain	IPR016040	-	73%
Blast2go	Polyketide synthase, enoylreductase	IPR020843	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0J4

Fln msg:

Fln protein: MEQIVPNREIILVSYADEGPVTDAHLKIRETQLDIGNVGRDGSPGDVVVQNEWISVDPYLRQRMKQPNDGLYLQNFQLNQAIKSRAVGKVVASANSKFEVGDLVSGLYEVSEYAVVPAGILRKIDTSVAKPSYYLGLLGTPALTAWIGFKIIGNPKPGDEVFVTAAAGAVGMVVGQLAKIKGCRVVGSAGSDQKVKLLKEEFGFDDAFNYKSETDWDAALTRHFPRGIDIYFDNVGGRMLETVLNHINMKARIPLCGMISQYNQEWKQTFGVRNLLNLVGKCAKMEGFLCSKYFDRMGEFSEEMTGYIKEGKIKYKEDVKEGLESFLDAFNSMFSGENIGKPVIHLTPLP*

Protein Length: 352

Fln nts: CCAAGTTCTGTAAGTAGCTTAAACAGAATTTCTGTTGAAAGGGACCATCATTTCTTCCAACTGCCCAGATCGATAAATATAACTCACCTGCCTTGCCCATCGACCCACCTCTGTTTCTTTTTATTATTTTTACATAAATTTTGAAGTGCGGCAGCAAGTGTTTGTGGGGACATTGGAAGCCTGCAGC_-_ATGGAGCAGATAGTTCCCAACCGAGAGATAATTCTAGTTTCCTATGCTGATGAAGGGCCTGTCACCGATGCTCATTTGAAAATCAGAGAAACCCAATTGGATATTGGAAATGTAGGCAGAGACGGATCGCCCGGAGACGTTGTGGTGCAAAATGAATGGATATCTGTAGATCCATATCTGAGACAGCGTATGAAACAACCCAATGATGGCCTCTATCTCCAAAATTTTCAGTTGAATCAGGCGATTAAATCTCGTGCAGTAGGGAAAGTAGTGGCATCTGCTAATTCGAAGTTTGAAGTCGGCGATCTTGTTTCGGGGCTTTATGAAGTCTCTGAGTATGCTGTTGTTCCAGCGGGGATTCTCAGAAAAATTGACACCAGTGTTGCTAAACCGTCCTATTATTTGGGACTTCTGGGGACGCCCGCTTTGACTGCATGGATTGGTTTCAAGATCATCGGAAACCCTAAGCCCGGGGATGAAGTATTTGTCACGGCAGCAGCAGGAGCAGTGGGAATGGTTGTTGGGCAACTCGCCAAAATCAAAGGCTGCCGCGTTGTTGGCAGCGCAGGTAGCGACCAGAAGGTGAAACTGCTGAAGGAAGAATTTGGTTTTGATGATGCCTTCAATTACAAGTCAGAGACAGACTGGGATGCAGCTTTGACCAGGCACTTTCCCAGAGGTATAGACATCTACTTTGACAATGTGGGTGGGCGCATGCTGGAAACTGTTCTGAACCACATCAATATGAAAGCTCGGATTCCTCTCTGTGGAATGATATCTCAGTATAATCAGGAGTGGAAGCAAACTTTTGGAGTGAGAAACCTGCTTAACTTGGTGGGAAAATGTGCCAAGATGGAAGGCTTCCTGTGTTCGAAATACTTTGATCGCATGGGGGAGTTCTCAGAGGAGATGACAGGTTACATCAAGGAAGGGAAAATCAAATACAAGGAAGATGTGAAAGAGGGGTTGGAGAGCTTCTTGGATGCCTTCAATTCCATGTTTAGTGGAGAGAATATTGGTAAACCTGTCATTCATCTCACACCATTGCCATAA___TTTTGAACCAAAAATGTTTCGGCCTGAAAGTTCAGGTCTGCTGAAGTGATGGAGGAGGCTGCAGTCACGTTGACCTTGATGAGATGTAGGCCCCTTTGTAGATTTTTACATGATTTAAAGGTAGCTGTATATCAAATTTTAATTTGATATATTGTGTCTGTGAAGTTTTAAATAATTACCTACTTTGCTATCATATTTCTATACATAATACAGAATCGCACTGTACAGGAGATCAACTCACCTTGTAAAAAGTTTATAATAAAGCTATAAAGGATTAATAGTTT

Fln Alignment:

sp_v1.1_unigene31308___MEQIVPNREIILVSYADEGPVTDAHLKIRETQLDIGNVGRDGSPGDVVVQNEWISVDPYLRQRMKQPNDGLYLQNFQLNQAIKSRAVGKVVASANSKFEVGDLVSGLYEVSEYAVVPAGILRKIDTSVAKPSYYLGLLGTPALTAWIGFKIIGNPKPGDEXXXXXXXXXXXXXXXXXAKIKGCRVVGSAGSDQKVKLLKEEFGFDDAFNYKSETDWDAALTRHFPRGIDIYFDNVGGRMLETVLNHINMKARIPLCGMISQYNQEWKQTFGVRNLLNLVGKCAKMEGFLCSKYFDRMGEFSEEMTGYIKEGKIKYKEDVKEGLESFLDAFNSMFSGENIGKPVIHLTPLP
A9P0J4_______________MEQTIPNREIILVSYADEGPVTDAHLKIRETQLDIGNVGRDGSAGDVVVQNVWISVDPYLRHCMKKSNDGLYLQNFQLNQAIKSGSVGKVVASSNSEFEVGDLVAGLLQVSEYAVVPGGILRKIDATVAKPSDYLGLLGVPALTAWVGFTIIGNPNPGDEVFVSAAAGSVGMVVGQLAKIKGCRVVGSAGSDQKVKLLKEEFGFDDAFNYRSETDWDAALTRHFPRGIDIYFDNVGGRMLEAVLNHINMKARIPLCGMISQYNEEWKQRYGVRNLLNLVGKCAKMEGFMCTKYFHRRGEFVEEMTGYIKEGKIKYKEDVKEGLESFLDAFNSMFSGENVGKPVIHLTPPP

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
44	20		80		0.995493
47	20		80		0.995493
48	85	14			0.993533
49	14	14			0.984337
50			71	28	1.0
57	14			85	0.993533
58	14	85			0.993533
60		85		14	0.993533
61	14	85			0.993533
62			14	85	0.993533
64			42	57	1.0
168	50	50			1.0
387	25			75	0.996473
618	88	11			0.991528
619		11	88		0.991528
620	88	11			0.991528
622		88		11	0.991528
636		85	14		0.993533
686		14	85		0.993533
687	14		85		0.993533
1027	90		10		0.90298
1185	86		13		0.999973
1372	90	10			0.90298
1374	90	10			0.90298
1375	90	10			0.90298
1377		90		10	0.90298
1384		11		77	0.968132
1391	11	88			0.991528
1392		12		87	0.992554
1393		14		85	0.993533
1396	83			16	0.994512
1406	20			80	0.995493
1439		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain