SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31235

Length: 525 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31235

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-ketoacyl-CoA synthase 4 n=2 Tax=Arabidopsis RepID=KCS4_ARATH	-	-	2.0e-34	58%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	0.0	73%
Blast2go	cuticle development	GO:0042335	Biological Process	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	FAE1/Type III polyketide synthase-like protein	IPR013601	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9Z6

Fln msg: Separated hits, possible frame ERROR between 93 and 108, and possible frame ERROR between 419 and 440, Distance to subject end: 104 aas, your sequence is shorter than subject: 175 - 525

Test code: 1

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: MGGCSANLIALDLASSCLRVSNRGTYAIVVxxxxxxNWYFGNHEPMLVSNILFRMGCAVVLLSNKRTDRHRAKYRLLHIVRTQRAGVSDMAYHAAFQEEDPTGTVGVNLSKHIMEIAAEALKANMRQLGPLVLPYYEQIxxxxxxxxFYENAGKGTAREYVPNFKRAFNHICIHS

Protein Length: 176

Fln nts: ATGGGGGGTTGCAGCGCTAACCTAATTGCTCTGGATCTTGCTTCTTCTTGTCTTAGGGTTTCGAACAGAGGAACTTATGCAATCGTCGTGACxxxxxxxxxxxxxxxAAATTGGTATTTCGGAAACCATGAGCCCATGCTGGTTTCCAACATTTTGTTCAGAATGGGATGCGCGGTTGTGCTTTTGTCGAATAAAAGAACCGATCGTCACAGGGCTAAATACAGATTGCTTCATATTGTCAGAACGCAGAGGGCAGGGGTAAGTGACATGGCGTATCATGCAGCTTTTCAAGAAGAGGATCCAACGGGAACTGTTGGGGTTAATCTCAGCAAACACATTATGGAAATTGCTGCAGAGGCTCTCAAGGCCAATATGCGCCAATTGGGTCCTCTGGTTCTTCCTTATTATGAGCAAATTCxxxxxxxxxxxxxxxxxxxxxTGTTCTATGAGAATGCAGGGAAAGGGACTGCTAGAGAATATGTGCCCAATTTTAAGCGAGCGTTTAATCACATTTGCATCCATTCTGG

Fln Alignment:

sp_v1.1_unigene31235___GCSANLIALDLASSCLRVSNRGTYAIVVTxxxxxNWYFGNHEPMLVSNILFRMGCAVVLLSNKRTDRHRAKYRLLHIVRTQRAGVSDMAYHAAFQEEDPTGTVGVNLSKHIMEIAAEALKANMRQLGPLVLPYYEQILxxxxxxxFYENAGKGTAREYVPNFKRAFNHICIHS
D5A9Z6_______________GCSANLIALDLASACLRVSNRGTYAIVLSxxxxxNWYFGNYEPMLVSNILFRIGCGAVLLSNKRSDRHRAKYRLLNVVRTQRAGVSDIAYRAAFQEEDPTGTVGVNLSKDIMDIAAEALKANMRELGPLVLPYYEQILxxxxxxxYYENAVKGAAREYVPDFKSAFDHICIHS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain