SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31230

Length: 689 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31230

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Long-chain-fatty-acid CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9S3P6_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	amp-binding protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:6.2.1.2-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid elongation	GO:0030497	Biological Process	75%
Blast2go	long-chain fatty acid [acyl-carrier-protein] ligase activity	GO:0008922	Molecular Function	75%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Blast2go	AMP-dependent synthetase/ligase	IPR000873	-	75%
Blast2go	AMP-binding	IPR020459	-	75%
Blast2go	AMP-binding, conserved site	IPR020845	-	75%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
315	66		33		0.997452
328		20	80		0.995493
333	80		20		0.995493
334	80			20	0.995493
338		20		80	0.995493
340		80		20	0.995493
341	80		20		0.995493
342	80		20		0.995493
343	80	20			0.995493
345	80		20		0.995493
347		20	80		0.995493
349		20	80		0.995493
350			80	20	0.995493
352	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain