SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31111

Length: 1546 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31111

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP-mannose 3,5-epimerase 1 n=11 Tax=Spermatophyta RepID=GME1_ORYSJ	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	gdp-d-mannose-3 -epimerase	-	-	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	95%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUD9

Fln msg:

Fln protein: MGSIGADGMTYGEYTYENLDRELYWPSEKLKISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMDNCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAGRINGVKRLFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTITSTDRFEMWGDGEQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVSSFENKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQIEKEKAQGIDLSIYGSSKVVGTQAPVQLGSLRAADGKE*

Protein Length: 380

Fln nts: CGTCGTGACCTTGGCTGTCAATGGGGGTGAGTTCATAGATTTGAGGTGAGCATTAACTCATCTTCCATTCTAAGAAGCTTAAGAGAGAGCCTTTTGCATCAAGACTTTTCACTGAGCACC_-_ATGGGAAGCATTGGAGCTGATGGAATGACCTATGGAGAATACACCTATGAGAATCTCGATAGAGAGCTATACTGGCCAAGTGAAAAATTGAAAATTTCCATCACTGGAGCTGGTGGGTTCATTGCCTCCCATATTGCCCGGAGATTGAAATCTGAAGGGCATTACATTATTGCCTCTGATTGGAAGAAGAACGAGCACATGACTGAGGATATGTTCTGCAATGAATTCCATCTCGTCGATCTGAGAGTTATGGATAATTGCTTGGCTGTTACGAAAGGAGTCGACCATGTTTTCAACTTGGCCGCAGACATGGGTGGTATGGGATTCATACAGTCTAATCACTCCGTTATCATGTACAACAACACCATGATCAGTTTCAACATGCTCGAAGCTGGGCGAATCAATGGTGTTAAAAGGCTTTTCTATGCTTCTAGTGCATGCATTTATCCCGAATTCAAACAATTGGAGACCAATGTAAGCTTGAAGGAGTCTGATGCTTGGCCAGCTGAGCCTCAAGATGCATATGGCTTGGAAAAGCTTGCCACAGAAGAATTGTGCAAACACTACACCAAGGACTTTGGTATAGAATGCCGGATAGGGCGTTTCCACAACATTTATGGTCCTTTTGGCACATGGAAGGGTGGACGTGAGAAGGCTCCTGCTGCCTTTTGTAGGAAGACAATCACATCTACTGATAGGTTTGAAATGTGGGGAGATGGTGAGCAAACACGATCCTTTACATTCATTGATGAATGTGTGGAGGGTGTCTTAAGGTTGACTAAGTCAGACTTTAGAGAGCCAGTGAATATTGGTAGTGATGAAATGGTCAGCATGAACGAGATGGCTGAAATGGTGTCAAGCTTTGAGAATAAAAAGTTGCCGATACATCACATTCCTGGGCCAGAGGGTGTACGCGGTCGGAATTCTGACAATACATTGATTAAGGAAAAGCTAGGCTGGGCACCAACCATGAAGTTGAAGGATGGTTTGAGAATTACTTATTTCTGGATCAAGGAACAAATTGAGAAGGAAAAGGCTCAGGGAATTGATCTCTCCATCTATGGGTCTTCCAAGGTGGTTGGCACGCAAGCCCCTGTTCAACTTGGTTCTCTTCGTGCTGCTGATGGAAAGGAATGA___AAACCAGAACCTAGATCTCTGGTTAAGGGAATAAATGATAAGTCAGTTTTCATTAATGCTCGCAAGATGGTTAGCAGATGGAGGCCAAAATTAtTTTTTCTGcCATTATCAGGGCTTTGAGAATTTTAATTTAATTATTAATAATTATTAGATAGATGGTAGGAATTTAACTTCCACAGAATATTGTTAGTAGTAGTCAAAATAGAAGGTTGAGATTTATCTGAAAGGTACTTATGTCATTTTGATTTTACAATTCAATTTGAAAAAAAATGACATGTTTACAAGTGCC

Fln Alignment:

sp_v1.1_unigene31111___MGSIGADGMTYGEYTYENLDRELYWPSEKLKISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMDNCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAGRINGVKRLFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTITSTDRFEMWGDGEQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVSSFENKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQIEKEKAQGIDLSIYGSSKVVGTQAPVQLGSLRAADGKE
A9NUD9_______________MGSIGADGVTYGEYTYANLDRELYWPSEKLKISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMDNCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTITSTDRFEMWGDGEQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVSSFENKKLPIHHIPGPEGVRGRNSENTLIKEKLGWAPTMKLKDGLRITYFWIKKQIEKEKAQGIDLSIYGSSKVVGTQAPVQLGSLRAADGKE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
40	66			33	0.997457
134	16			83	0.994512
138	83		16		0.994512
289	80		20		0.999999
884			12	87	0.992554
993			10	90	0.90298
1366		83		16	0.994512
1373	14			85	0.993533
1375		83		16	0.994512
1430			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain