SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31106

Length: 509 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene31106
GTGAGTAAAATCGGCGATGTAGGACTAGCTAAGCTCATTCTCCCAACAGTATCTTGCACAATTACTGAATATAAGAACACAATCCTTGCTGGTACCTTCTGTTACATGGATCCAGAGTACCTACGGACCGGAATATTCCACCCTAAGTCTGATTTATATGCCCTAGGAATTATTCTCCTGCAATTGCTGACAGCCAAACACCCAATGGCCCTTACAGAAAAGGTTGAGGCAGCCCTCGAGGAGGGCTCATTCAATGGAATTCTGGACAAAACTGCAGGGGGTTGGCCTCTTGAGGAAACTATAGAGTTCGCTAAGCTTGCTCTCAAATGCACAGAATTCCGGCGCAGAGACAGACCAGATATGGGGACAGTTGTTCTGCCAGAATTAGAGAGATTCAGAGATCTTGCTGATGCTCATGCTGAGCACTGCACTTCCTGGCTACTTACATTGTCCAATTCTTCAAGGGGGTTCACCCTTACGCAAAATTGTAATTAAGAAATGGCCCAGAA

Ace file of the UniGene sp_v1.1_unigene31106 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase family protein n=3 Tax=Arabidopsis RepID=Q1PF03_ARATH	-	-	1.0e-36	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	kinase family protein	-	-	1.14844e-36	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	1.14844e-36	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC39

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 22 aas,

Fln protein: MDPEYLRTGIFHPKSDLYALGIILLQLLTAKHPMALTEKVEAALEEGSFNGILDKTAGGWPLEETIEFAKLALKCTEFRRRDRPDMGTVVLPELERFRDLADAHAEHCTSWLLTLSNSSRGFTLTQNCN*

Protein Length: 131

Fln nts: GTGAGTAAAATCGGCGATGTAGGACTAGCTAAGCTCATTCTCCCAACAGTATCTTGCACAATTACTGAATATAAGAACACAATCCTTGCTGGTACCTTCTGTTAC_-_ATGGATCCAGAGTACCTACGGACCGGAATATTCCACCCTAAGTCTGATTTATATGCCCTAGGAATTATTCTCCTGCAATTGCTGACAGCCAAACACCCAATGGCCCTTACAGAAAAGGTTGAGGCAGCCCTCGAGGAGGGCTCATTCAATGGAATTCTGGACAAAACTGCAGGGGGTTGGCCTCTTGAGGAAACTATAGAGTTCGCTAAGCTTGCTCTCAAATGCACAGAATTCCGGCGCAGAGACAGACCAGATATGGGGACAGTTGTTCTGCCAGAATTAGAGAGATTCAGAGATCTTGCTGATGCTCATGCTGAGCACTGCACTTCCTGGCTACTTACATTGTCCAATTCTTCAAGGGGGTTCACCCTTACGCAAAATTGTAATTAAGAAATGGCCCAGAA

Fln Alignment:

sp_v1.1_unigene31106___MALTEKVEAALEEGSFNGILDKTAGGWPLEETIEFAKLALKCTEFRRRDRPDMGTVVLPELERFRDLADA
D5AC39_______________MGIAYDVERAIEKGSFKNILDQSVTDWPVREAMELAKLALKCVEMRRRDRPDLETVVLPELQRLKAIADS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
230	33	66			0.997452
389	75		25		0.996473
408	75	25			0.996473
409	75	25			0.996473
412			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain